Methylocystis sp. MJC1: OGR47_02885
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Entry
OGR47_02885 CDS
T11178
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
memc Methylocystis sp. MJC1
Pathway
memc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
memc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OGR47_02885 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
memc03400
]
OGR47_02885 (mfd)
Enzymes [BR:
memc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OGR47_02885 (mfd)
DNA repair and recombination proteins [BR:
memc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OGR47_02885 (mfd)
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NCBI-ProteinID:
UZX12425
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Position
581710..585249
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AA seq
1179 aa
AA seq
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MNKTALKTKGAASALESARARLAKGEKLLFAHAPEGFDAFLCADLARALAREAEGRPAVF
VHVSRDAGRSAAFRDALRFANPDVEVLDIPGWDCQPYDRVSPHANVVARRMTALSRLARA
SSSAERPRIVTTTADCLLQRVPPKKMVAAESFSAAPGNVVKLDELALWLEANGFLRASTV
RETGEYAQRGGLIDLFPPGMPAPIRLDFFGDTLESIRSFDPETQRATGQLRALDLTPMSE
LRLTSDTMRRFRQNYAARFGGQTRGDALYEAVSEGRRHHGMEHWLPLFYERMDTLFDYLG
DAPLMLDALVEEAARERVKQVADYYDARKEAHDLDPANSNYKPLEPSALYLKLDEWRDAL
AERANAQFSPFASERADAVDCGARPGRDFAPERNEPEVNVFQAAADHVQTLRGAGKTVVV
AGWSDGSCERLGHVLQEHGLKELALVGSLPAALAKGQGGVSLAVLGVEHGFETDAYALVG
EQDILGDRLVRRRRKRKAENLLGEVAALTAGDLVVHVDHGIGRFVGLETITAAGAPHDCL
ELHYAGGDKLYLPVENIELLTRYGGEDTDAQLDKLGGVGWQTRKARLKNRIREMAKGLIA
IAAQRQLRQAPKLIPPEGVWDEFCARFPYDETEDQLAAIEAVLDDLASGRPMDRLVCGDV
GFGKTEVALRAAFCSAINGKQVAVVAPTTLLARQHYKTFTERFAGLPIKIGRLSRMVGTA
EARETKKELGEGKVEILVGTHAILGKGVNFSDLGLVIIDEEQHFGVGHKERLKELRAEVH
VLTLSATPIPRTLQLAMTGVRELSLITTPPVDRLAVRSFISPFDPLIVREALLRERYRGG
QAFFVCPRIEDLEAAAAFLRENLPEAKFVIAHGQMSPSELEDKMSAFYDGKFDILLSTTI
VESGLDIPSANTLIVWRADMFGLAQLYQLRGRVGRSKTRAYALFTTPANRTITPQAQKRL
EVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLSDAITLLKAGV
EEPEEEVWSPTIAIGAPVTIPEDYIPDLTLRLQLYRRLSTLETDHDIEAFAAEMIDRFGP
IPPEVEQLLEIVAIKAMCRRAHVEKVDAGPKGVIIAFRDNLFADPAGLVRYVAEQGASAK
VRQDMRIVFIREFDTMKQRLAGTRRILRALVGIAEKKPS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaagacggccctgaagaccaagggcgccgctagcgcgctggagagcgcgcgggcg
cgtctcgccaagggcgagaagctgctgttcgcccatgcgccggaaggcttcgacgcattt
ctttgcgccgatctcgcccgcgcgctggcgcgcgaggccgaggggcgcccggccgtcttc
gtccatgtctcgcgcgacgcgggccgttcagcggcctttagagacgcgttgcgcttcgcc
aatcccgatgtcgaggttttggacatccccggctgggactgccaaccctatgaccgcgtc
tcgccgcacgccaatgtcgtcgcacggcgcatgaccgcgctttcgcggctggcgcgcgcc
agctcctccgccgagcgcccgcgcatcgtgacgacaacggcggattgcctgctgcaacgc
gtgccgccgaagaaaatggtcgcggcggaaagcttctcggccgcgccgggcaatgtggtg
aagctcgacgagctggcgttgtggctggaggccaacggctttctgcgcgccagcacggtg
cgcgagaccggcgaatacgcccagcgcggcggcttgatcgatctctttccgccgggcatg
ccggcgccgatccgtctcgatttcttcggcgacacactggaatcgatccgcagcttcgat
cccgagacgcagcgcgccaccggccaattgcgcgcgctcgatctcacgccgatgagcgag
ttgcggctcacctccgacaccatgcgccgctttcgccagaattatgcggcgcgcttcggt
ggccagacgcgcggcgacgcgctttacgaggccgtgagcgagggccggcgccatcacggc
atggagcattggctgccgctcttctatgagcgcatggatacgctcttcgattatctcggc
gacgcgcccttgatgctcgacgcgctggtcgaagaagcggcgcgcgagcgcgtgaagcag
gtcgccgattattacgacgcccgcaaggaggcgcacgacctcgatcccgccaactccaat
tacaagccgctggagccgagcgcgctttatctgaaactggatgagtggcgcgacgcgctg
gccgagcgcgccaacgcccaattctcgcctttcgcctccgagcgcgccgacgccgtcgat
tgcggcgcgcgaccgggccgcgatttcgcacccgagcgcaacgagccggaagtgaatgtc
ttccaggcggcggcggatcatgtgcagacgctgcgcggcgccggcaagacggtcgtcgtc
gccggctggtcggacggctcctgcgagcgtctcggccatgtgctgcaagagcacgggctc
aaggagcttgcgctcgtcggctctctgccagcggcgctcgccaaagggcaggggggcgtc
tcgctcgccgtgctcggcgtcgagcatggcttcgagaccgacgcttatgcgctggtgggc
gagcaggacattctcggcgatcgtctcgtgcgccggcggcgcaagcgcaaggcggaaaat
ctcctcggcgaagttgcggcgctcacggcgggcgatcttgtcgtgcatgtcgatcacggc
atcgggcgcttcgtcgggctggagacgatcaccgccgccggcgcgccgcatgattgtctg
gagctgcattacgctggcggcgacaagctctatctgccggtcgagaacatcgagcttctg
acccgctatggcggcgaagacaccgacgcgcagctcgataaattgggcggcgtcggctgg
cagacgcgcaaggcgcggctgaagaaccgcatccgcgaaatggcgaagggcctcatcgcc
atcgccgcgcagcggcaattgcgccaagcgcccaagctcattccgccggaaggcgtctgg
gacgaattctgcgcacgcttcccctatgacgagacggaagatcagctcgccgcgatcgag
gctgttctcgacgatctcgcgtcgggacggccgatggatcggctcgtttgcggcgacgtc
ggcttcggcaagacggaagtcgcgttgcgcgccgccttctgctcggcgatcaatggcaag
caggtcgcggtcgtcgcgccgacgacactgctcgcgcgccagcactacaagaccttcact
gaacgcttcgccggcttgccgatcaagatcggacggctgtcgcgcatggtgggaaccgcg
gaagcgcgcgagaccaagaaggagcttggcgaaggcaaggtcgagattctcgtcggcacg
catgcgattttgggcaagggcgtcaatttctccgacctcggcctcgtcatcatcgacgaa
gagcagcatttcggagtcggccacaaggagcgcttgaaggagctgcgcgccgaagtgcat
gtgctgacgctttcggcgacgcccattccgcgcacgctgcaactcgctatgacaggcgtg
cgcgagctttcgctcatcaccacgccgccggtcgatcgccttgccgtgcgcagcttcatc
tcgcccttcgatccgctgatcgtgcgcgaagccctgctgcgcgagcgctatcgcggcgga
caggcgttcttcgtctgcccgcgcatcgaggatctggaagccgccgccgctttcctgcgc
gagaatttgccggaggcgaaattcgtcatcgcacatgggcagatgagcccgagcgaactc
gaagacaaaatgtcggctttctatgacggcaagttcgacattctgctgtcgacgacgatc
gtcgagtctggcctcgatattccttccgccaacacgctcatcgtgtggcgcgccgatatg
tttggccttgcgcagctttatcaattgcgcgggcgcgtcggccgttccaagacgcgcgct
tacgcgctcttcaccacgccggccaatcgcaccatcacgccacaggcgcagaaacgtctc
gaagtgctgcaatcgctcgatacgctcggcgccggcttccagctcgcgagccacgatctc
gacattcgcggcgccggcaatctgctcggcgacgagcagtcgggccatatcaaggaagtc
ggctacgagctgtatcagcagatgctctcggacgcgatcacgctgctcaaggcgggcgtc
gaggaaccagaagaggaggtgtggtcgccgaccatcgccatcggcgcgccggtgacgata
ccggaggattacatccccgatctcaccctgcgcctgcagctctaccggcgcctatcgacc
ctggagaccgaccacgacatcgaggccttcgccgccgagatgatcgaccgcttcggcccc
attccgcccgaggtcgagcagcttcttgaaatcgtcgcgatcaaggcgatgtgccgccgc
gcccatgtcgagaaagtcgatgcgggaccgaagggcgtcatcatcgccttccgcgacaat
ctctttgccgacccggccgggctcgtgcgctatgtcgcggagcagggcgcctcggccaag
gttcggcaggatatgcgcatcgtcttcatccgcgaattcgacacgatgaagcagcgtctc
gccggcacgcggcgtatcctgcgcgcgctcgtcggcattgcggagaaaaagccgagctga
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