Methylocystis sp. MJC1: OGR47_04190
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Entry
OGR47_04190 CDS
T11178
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
memc Methylocystis sp. MJC1
Pathway
memc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
memc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OGR47_04190 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
memc03021
]
OGR47_04190 (rpoD)
Transcription machinery [BR:
memc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OGR47_04190 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
LPD39
DUF4351
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
UZX12669
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All DBs
Position
856084..858099
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AA seq
671 aa
AA seq
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MAKKDEDKADNEGAVTVDAADGPLLDLNDAAVKRMIKLAKKRGFVTYAELNAVLPSEEVS
SDQIEDVYAMLSEMGITVSEGDDPDDAEEEQAAEEEEAEGGEVVESPRATAVATRSSEPA
DRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWREEL
EAGKVLLRDIIDLEATYAGPEGKAGAKPADEEGEGDEMAPATAPSTPPAGLAEGAPPEET
FEEEDDMENSVSLSAMEAELKPKVLETFARVADAYKKLRRLQDQNVENKLKNETLTPAQE
RKYKQLKKEIVTDVKSLSLNQNRIEALVEQLYDINKRLIGYETKLLRLADSYGVAREDFI
DKFHGSELDPKWVMRVAQLRSKGWKEFVAEEKDRIKDLRAEIHALATETGLEISEFRKIV
HMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEE
LAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIEAAIQSNLRE
TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS
RSRKLRSFLDN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaaagatgaagataaggccgataacgaaggcgccgtgacggtagacgccgcc
gacgggccgcttctcgacctcaatgacgccgccgtcaagcggatgatcaagctcgccaaa
aagcgcggcttcgtcacctatgccgaattgaacgccgtcctgccgtctgaggaggtttcc
tccgaccagatcgaggacgtttacgccatgctctccgagatgggcatcaccgtctccgag
ggcgacgatccggacgacgccgaggaagagcaggccgccgaggaagaggaagccgagggt
ggcgaggtcgtcgagagcccgcgcgcgacggcggtggccacgcgctcctccgagcctgcc
gatcgcaccgatgaccccgtgcgcatgtatttgcgcgaaatggggtcggtcgagctgctc
tcccgcgagggcgagatcgccatcgccaagcgcatcgaggctggccgcgaggcgatgatc
gcgggcctctgcgagagtccgctgaccttccaggcgatcatcatctggcgcgaggagctc
gaggccggaaaggtcctgctgcgcgacatcatcgacctcgaggcgacttacgccgggccg
gagggcaaggcgggcgcgaaacctgctgacgaggagggagagggcgacgagatggcgccg
gccaccgcgccgagcacgccgccggcgggccttgccgagggcgctccgcctgaggaaacc
ttcgaggaagaagacgacatggagaattccgtgtcgctttcggccatggaggcggagctg
aagccgaaggttctcgaaacctttgcgcgcgtcgccgacgcgtataagaagctgcgccgc
ctgcaggatcagaacgtcgagaacaagctcaagaacgagacgctgacgcccgctcaggag
cgcaaatacaagcagctaaagaaagagatcgtcaccgacgttaaatctctttccctgaac
cagaaccgcatcgaggcgctggtcgagcagctctacgacatcaacaaacgtctcatcggc
tatgagacgaagctgctgcgccttgccgacagctatggcgtggctcgtgaggacttcatc
gacaaattccacggctcggagctcgaccccaaatgggtgatgcgcgtcgcgcagctgcgc
tccaagggctggaaggaattcgtcgccgaggagaaggaccgcatcaaggatctgcgcgcc
gaaatccatgcgcttgcgaccgagacgggcttggagatctccgagttccgcaagatcgtg
catatggtgcagaagggcgagcgcgaagcgcgtcaggcgaagaaggaaatggtcgaggcc
aatctgcgcctcgtcatctccattgccaagaaatacaccaaccgcggcctgcagttcctt
gacctcattcaggaaggcaatattggcctgatgaaggcggtcgataagtttgaatatcgc
cgcggctacaagttctcgacctacgccacatggtggattcgtcaggccatcacgcgcagc
atcgcggaccaggcgcgaacgattcgtatcccggtgcatatgatcgagacgatcaacaag
atcgtccgcacctcgcgccagatgctgcatgagatcggccgcgagccgacgccggaggaa
ctcgccgaaaagctcgccatgccgctcgaaaaagtgcgcaaggtgctcaagatcgccaag
gagccgatctcgctcgaaacgccgatcggcgacgaggaggattcgcatctcggcgatttc
atcgaggacaagaacgccgtgctgccgatcgaggcggcgatccagtcgaatctgcgcgag
acgacgacgcgcgttctggcctcgctgacgccgcgcgaggagcgcgtgctgcgcatgcgc
ttcggcatcggcatgaacaccgaccacacgctggaggaagtcggccagcagttctcggtg
acccgcgaacgtatccgtcagatcgaggcgaaggcgctgaggaagctgaagcatccgagc
cgcagccggaagctgcggagcttcctggataactga
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