KEGG   Methylocystis sp. MJC1: OGR47_05955
Entry
OGR47_05955       CDS       T11178                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
memc  Methylocystis sp. MJC1
Pathway
memc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:memc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OGR47_05955 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:memc03400]
    OGR47_05955 (ligD)
Enzymes [BR:memc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OGR47_05955 (ligD)
DNA repair and recombination proteins [BR:memc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OGR47_05955 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: UZX12988
LinkDB
Position
1235095..1237722
AA seq 875 aa
MPTRARKDDSALAAYRARRDFSVTPEPKGGVSQGGAARLVVQRHFARREHFDLRLEMDGV
LKSWAVARGPSLNPADKRLAVRTEDHPLDYGDFEGLIPKGEYGGGTVMLWEDATFTPQNG
DPLEALEKGEIKFLAQGARMKGGWVLVRMKTRDKGENWLLIKERDEYADKDEDLAGQHVT
SVTTGRTREEIERGAKAKRVNRVNGDAASLATHTSPLRGGRRPKAAGWGPSRDDDDGAGP
HPTPLRGATLPVKGRDKSPEVPRSRAKAAYWSDKPIASAPTPKFIAPQLCETAEQPSSVG
DWIFELKYDGYRLELATGVDGARVYTRTGLDWTERFSGLARAAFALPCRNALLDGEAVVF
DEKGLSDFAMLVSALEAGRSERVEFVAFDLLMLDEKDLRREPLRKRKEQLEQLLAKSDGA
IRYGDYIEGDGQTVFAQATRAGAEGIIAKRGDRPYRSGRFSDWLKIKGDFREDVRIVGYR
PSEKGESFASLVAAKETPEGLRYVGRIGTGYDAATRRRLAPLLAKRAKKGNGPKLLAADK
IPKGVVLLETPFPAEVRFGGWTLDGQLRQARFLGVREDMTTQAPSQKEPPKLSRITHASR
VVFPADGITKGEIAAYYDAVAPRMAPHLADRPISLLRAPETVEELFFQRHPLKGMSKGIL
TVENEDEPYIALDGALGLHTAAQFGAIEIHGWMSLASDLDRPDRMVFDLDPDEDLPFRDT
CKAAADIRDYLKSIGLQSWPLLTGGKGIHIVLPLDRSLTYADTEVFAAGFARGLARQEPQ
RFVATMSKRRRAGRIFIDWLRNKKSATAILPWSLRARPGVTVAAPLSWKTLTDADSASDF
DIKTALGLKDEWRGFFETRQMIAPGALDFIKASGA
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgccgacgcgcgccaggaaggacgatagcgcgctcgccgcctatcgcgcccggcgcgat
ttttcggtcacgccggagccgaagggaggggtttcgcagggcggcgcggcgcgtctcgtc
gtgcagcggcatttcgcgcggcgcgagcatttcgacctgcggctcgagatggatggcgtg
ctcaagagctgggccgtcgcgcgcggtccgtcgttaaacccggccgacaagcgtctggct
gtccgcaccgaggaccatccgctcgattacggcgatttcgaagggctgatccccaaaggc
gaatatggcggcgggacggtgatgctgtgggaggacgcgactttcacgccgcagaatggc
gatccgctcgaggcgctggagaagggggaaatcaagttcctggcccagggcgcgcgcatg
aagggcggctgggttctggtgcgcatgaagacgcgcgacaaaggggaaaactggctcctg
ataaaggagcgggacgaatacgccgataaggacgaggacctcgccgggcaacatgtgacg
agcgtcacgaccggccgcacgcgcgaggagatcgaacgaggcgcgaaggcgaagcgcgta
aatcgagtaaatggggatgcggcgtcattagccacccatacctcccctttacggggaggt
cggcggccgaaggccgccgggtggggtccaagccgcgacgacgatgacggggccgggccc
cacccgaccccgcttcgcggggccaccctccccgtaaaggggagggataagagccccgag
gttcctcgatcacgggccaaggcggcctattggtcggacaagcccatcgcctccgcgccc
acgccgaaattcatcgcgccacaactctgcgagacagccgaacagccctcctccgtgggc
gactggattttcgaactgaaatatgacggctaccggctggagcttgcgaccggcgtcgac
ggcgcgcgcgtctatacgcgcacggggctcgactggaccgagcgcttttccggcctggcg
cgcgcggctttcgcgctgccctgtcgcaatgcgcttctcgacggcgaggcggtcgtcttc
gacgagaaggggctctccgatttcgccatgctggtctcggcgctggaagccggacgcagc
gagcgcgtcgagttcgtcgcgttcgatctgctgatgctggacgagaaggatctgcgccgc
gaaccattgcggaaacgcaaggagcagctcgagcagcttctcgccaaaagcgacggcgcc
attcgctatggcgattatatcgaaggcgacgggcagactgtctttgcgcaggcgacgcgc
gccggcgcggaagggatcatcgcaaaacgcggggacaggccctatcgcagcgggcgcttt
tcggattggctgaagatcaagggcgactttcgcgaggacgtgcggatcgtcggctaccgc
ccttccgagaagggcgagtcattcgcctcgctcgtcgccgcgaaagaaacgccggagggg
ctgcgttatgtcggacgcatcggcacgggctatgacgcggccacaaggcgcaggctcgcg
cctctattggccaagcgcgcgaaaaagggcaacggcccaaagctccttgcggcggacaag
attccaaaaggcgtcgtgctgctcgaaacgccttttccggcggaagtgcgcttcggcggc
tggacgttggatgggcaattgcggcaggcgcgctttctcggcgtgcgggaagacatgacg
acgcaagcgccctcgcaaaaggagccgccgaagctctcgcgcatcactcatgcgagccgc
gtcgtctttcccgccgatgggatcaccaagggcgagatcgccgcctattacgacgccgtt
gcgccgcgcatggcgccccatctcgccgatcggccgatcagcctgttgcgcgcgccggag
acggtcgaggagctgttcttccagcgccatccgctgaaagggatgagcaagggcattctt
accgtcgagaatgaagacgagccctatattgcgctcgacggcgcgcttggcctgcatacg
gcggcgcaattcggcgccattgaaattcacggctggatgtcgcttgcaagtgatctcgac
cgcccggatcggatggttttcgatctcgatccggatgaggacctgccctttcgcgacacc
tgcaaagccgctgcggatattcgtgattatctgaagtcgattggtctgcaatcctggccg
ctgctgacggggggcaagggcattcatatcgtgctgccgctcgatcgctcgctgacttac
gccgatacggaagtctttgcggcgggctttgcacgcggcctcgcgcgtcaggagcctcaa
cgcttcgtcgcgacaatgagcaagcggcgccgggctgggcgcatcttcatcgattggctg
cgtaacaaaaaatcggcgacggcgatcctgccgtggtcgctgcgcgcccgccccggcgtg
acggtggcggcgcctctgtcatggaagacgctgacggacgcagatagcgccagcgacttc
gacatcaaaaccgcgctcggcttgaaggatgagtggcgcgggttcttcgagacgcggcag
atgattgcgcctggggcgctggattttataaaggcgagcggcgcctga

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