Methylocystis sp. MJC1: OGR47_12130
Help
Entry
OGR47_12130 CDS
T11178
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
memc Methylocystis sp. MJC1
Pathway
memc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
memc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OGR47_12130 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
memc03019
]
OGR47_12130 (rnr)
03016 Transfer RNA biogenesis [BR:
memc03016
]
OGR47_12130 (rnr)
Enzymes [BR:
memc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OGR47_12130 (rnr)
Messenger RNA biogenesis [BR:
memc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OGR47_12130 (rnr)
Transfer RNA biogenesis [BR:
memc03016
]
Prokaryotic type
tRNA degradation factors
OGR47_12130 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
UZX10662
LinkDB
All DBs
Position
2481261..2483543
Genome browser
AA seq
760 aa
AA seq
DB search
MTTKKTPQQPSREDILAFLQREREATGARKIGVREIARAFGVKGEDRVALKRMIATLADE
GAIEKRGRRVNKKGALPPVVLVDITGRDRDGELIATPVEWDEDELGPAPRILIRSGRGVA
FGKKLSGEPVGGVGDRALVRAEPDHDAEAGEPPYTGRVVKLLSRARNRVLGVLKIEPNGN
GRILPIDKKQAGRGELSVASADIGEGKDGDLVSVDVAGKTRFGAPRARVRETLGSVTSEK
AVSLIALRAHDIPDVFRPEAISEAERAKPATMHGREDWRDLALVTIDPPDAKDHDDAVHA
APDLAPDNDGGFILTVAIADVAHYVKPHSPLDKDAVERGNSVYFPDRVVPMLPERISNDL
CSLRENEDRPAMAVRMRVTSKGRKIGHSFHRVMMRSRAKLSYQQAQAAIDGAPDQKTKPL
LENVLRPLYAAHEALQHARNLRAPLDLDLPERKILLKPDGGFDRVVIPPRLDAHRLIEEF
MILANVAAAETLEEHRQQLIYRAHDEPSKEKVTALGEFLATIGVKLAKGQVLKPEHFNVI
LARVKGLEHENIVNEIILRTQAQAEYTHENYGHFGLNLRRYAHFTSPIRRYADLIVHRAL
VRALKLGDGALPEMPVGELAEIAARISAAERRAMAAERETVDRLIAHYLADQLGARFGAR
ISGVTKSGLFVRLIETGADGFVPAATLGREYYSYDEASHSLTSRSGMSYRLADIIEVRLV
EAAPIAGALRFEVVGGGERRTPPRNPKSFKPGPRGGRSKR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
ttgacaactaagaaaacaccccaacaaccctcccgcgaggacatcctcgccttccttcag
cgcgaacgcgaagccacgggcgcccgcaagatcggcgtgcgcgagatcgcccgcgccttc
ggcgtcaagggcgaggaccgcgtcgccttgaagcgcatgattgcgacgcttgccgacgag
ggcgcgatcgagaaacgtggtcgccgcgtcaacaaaaagggcgccctgccgcccgtcgtg
ctggtcgacattaccggtcgggaccgtgacggcgagctaatcgcaacgcccgttgagtgg
gacgaagacgagctcggccccgccccgcgcatcctcatccgctccggacgcggcgtcgcc
ttcggcaaaaagctttccggcgagcccgtgggcggcgtcggcgaccgcgcgctggtgcgg
gccgagccggaccacgacgccgaagccggcgagccgccctataccggccgcgtcgtcaaa
ctcctctctcgcgcgcgcaaccgcgtgctgggcgtgttgaagatcgagcccaacggcaat
ggccgcattctgccaatcgacaagaaacaggcgggccgcggcgagctttcggtcgcgtcg
gccgacatcggcgaaggcaaggacggcgatctcgtctcagtcgatgtcgccggcaagacg
cgtttcggcgcgccgcgcgcccgcgtgcgcgagacgcttgggtcagtcacgagcgaaaag
gccgtgagcctcatcgcgctgcgcgcccatgacattcccgacgtcttccgcccggaagcc
atctcggaagccgaacgcgccaagcccgcgaccatgcatggccgcgaagattggcgcgac
ctggcgctcgtcaccatcgatccgccggacgcgaaagaccatgacgacgccgtgcacgcc
gcgccggatttggcgcccgataatgacggcggattcatcctcacagtcgccatcgcggac
gtggcgcattatgtgaagccgcattcgcccttggacaaagacgcggtggagcgcggcaac
tcggtctatttccccgaccgcgtcgtgcccatgctgcccgagcgcatctccaacgatctc
tgctcgctgcgcgagaacgaggaccggcccgccatggccgtgcgcatgcgcgtgacaagc
aaaggcaggaagatcggccacagcttccatcgcgtcatgatgcgctcgcgcgcgaagctc
tcctaccaacaggcgcaggcggcgatcgacggcgcgcccgaccagaagacgaagccgctt
ctcgaaaatgtgctgcggccgctctacgccgcgcatgaagcgctgcaacatgcgcgcaat
ctacgcgcgccgctcgatctcgatctccccgagcgcaagatcttgttgaagcccgacggc
ggcttcgatcgcgtcgtcattccgccgcgcctcgacgcgcatcggctgatcgaggagttc
atgatcctcgccaatgtcgccgccgccgagacattggaggagcatcgccagcagctcatc
tatcgcgcccatgacgagccctcgaaagagaaagtgacggcgctgggcgagttcctcgcc
accatcggcgtgaagctcgccaagggacaggtgctcaagcccgagcatttcaacgtgatc
ctggcgcgcgtgaaggggctggagcacgagaacatcgttaatgagatcattctgcgcaca
caggcgcaggccgaatatacgcacgaaaactatggtcacttcggcctgaacttgcgccgc
tacgcgcatttcacctcgcccatccggcgctatgccgatctcatcgtgcatcgcgcgctc
gtccgcgctttgaaactcggcgacggcgcgctgccggaaatgcccgtgggagagctcgcg
gaaatcgccgcgcgcatttcggcggccgagcgtcgcgccatggcggcggagcgcgaaaca
gtggaccggctgatcgcgcattatcttgcggatcaactcggcgcgcgtttcggcgcgcgc
atttcgggcgtcaccaaatcggggctgttcgtgcggctgatcgaaacgggcgccgatggc
ttcgtgccggccgcgacgctcgggcgcgaatattattcctatgatgaagcgagccattcg
ctcacctcgcgctcagggatgagctatcggctcgcggacattatcgaagtgcggctcgtc
gaggccgcgcccatcgccggcgcgctgcgcttcgaggtggtgggcggcggcgagcggcga
acgccgccgcgcaatcccaaatccttcaagcccggcccgcgcggcggccgctcgaaacgg
tga
DBGET
integrated database retrieval system
