KEGG   Methanobacterium alkalithermotolerans: HYG87_02645
Entry
HYG87_02645       CDS       T07794                                 
Name
(GenBank) exosome complex protein Rrp42
  KO
K12589  exosome complex component RRP42
Organism
meme  Methanobacterium alkalithermotolerans
Pathway
meme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:meme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HYG87_02645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:meme03019]
    HYG87_02645
Messenger RNA biogenesis [BR:meme03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     HYG87_02645
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     HYG87_02645
SSDB
Motif
Pfam: RNase_PH RNase_PH_C DUF2737
Other DBs
NCBI-ProteinID: QUH22748
UniProt: A0A8T8K2Q5
LinkDB
Position
complement(572804..573604)
AA seq 266 aa
MVNKMNIVPEITRKSITHLINNQERVDGRALDEYREISLETGVISKAEGSARVKIGNTQI
MVGTKPQIGEPFPDTPDVGVLMTNSELLPMASPSFEPGPPDERSVELSRVADRCIRESEM
VDLKELCIIPGKKVWMVFIDLHILDYDGNLMDAAVLGAVAALKNTMIPEVKVVDNEIIID
HENMKPLPIREEVVMCTFAKIGEQLVIDPSLDEEEILSARLSIGITASDKICAMQKGGDS
PLTKEEIMNAVKITEGKSKELMKYLE
NT seq 801 nt   +upstreamnt  +downstreamnt
atggtgaataaaatgaatatcgttccagaaattactcgtaaaagtataactcatctgatt
aataaccaagaacgggttgatggtagggccctggatgaatatcgtgagatatccctggaa
accggtgttatttccaaagctgaaggttctgcacgtgtcaaaataggcaatactcagata
atggtaggtaccaaaccacaaattggggaaccattcccggatactcctgatgtgggggtt
ttaatgaccaattctgaactactccctatggcctcccccagttttgaaccaggaccacca
gatgaaagatcggtagagctctcccgggtagcagatagatgtattcgggaaagtgaaatg
gttgatctaaaagaattatgcattattccgggcaaaaaagtatggatggtatttattgac
ctgcatatactggattatgatggtaatctgatggatgcggcggttttaggtgctgtagct
gctttgaaaaataccatgattcctgaggtaaaagtggtggataatgaaataattattgac
catgaaaatatgaaacccttgcctatacgggaagaggtagtgatgtgcacttttgctaag
ataggggagcagctggtaattgacccttcacttgatgaagaagaaattctatctgcacgg
ttatctattggaataactgcatctgataaaatctgcgccatgcaaaaaggtggagattct
cctttgactaaagaggagattatgaatgcagttaaaattacggaaggtaaatcaaaagaa
ctcatgaaatatttggaatga

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