Methanobacterium alkalithermotolerans: HYG87_02650
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Entry
HYG87_02650 CDS
T07794
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
meme
Methanobacterium alkalithermotolerans
Pathway
meme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG87_02650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meme03019
]
HYG87_02650
Messenger RNA biogenesis [BR:
meme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HYG87_02650
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
HYG87_02650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
QUH24268
UniProt:
A0A8T8K6K3
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All DBs
Position
complement(573594..574283)
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AA seq
229 aa
AA seq
DB search
MGAKSREDGRAFDELRNLKIEAGVLERADGSAYLEFGGNKVLVAVYGPKESFIRRFQRPD
RAYIRCRYNMAPFSVDDRKRPGPDRRSIEISKITAEALQPAVILEKYPRSVIEIFIEVLE
AEGGTRCAGITAASVALADAGIPMKDMVVACAAGKVDGQVVLDLSEVEDKDGQADVPVAI
LPRSGEITLLQSDGNLTTAEFEKALDLAIKGCNQISEVQKEALKKRYGE
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
attggggcaaaatcaagagaagatggaagagcttttgatgaattaagaaatttaaaaatc
gaagcaggtgtattagaaagggcggatggttcagcttacctggaatttggagggaataaa
gtactggtggcagtttatggccctaaagaatcattcataagaagatttcagcgaccagac
cgggcatatatacgatgccggtataacatggcacctttctcggtggatgaccgtaaaaga
ccgggcccggataggagatcaattgagatatctaagataactgctgaagcactccagcca
gcagtgatactggaaaaatatccccgttctgtgattgagatttttattgaagtactggaa
gcagagggaggcacccgttgtgccgggattactgcagcatctgtagctctggctgatgca
ggtatccctatgaaggatatggtggtggcctgtgctgcagggaaagtggatggacaggtg
gtactggacctttcagaagtggaagataaagatggacaggcagatgtgccggtggccatt
ttacctcgcagtggcgaaattacattgctacaaagcgatggtaatttaactacagctgaa
tttgaaaaagcactggatctggccattaaaggatgcaatcagattagcgaagtacaaaag
gaagccctgaaaaagaggtatggtgaataa
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