Methanobacterium alkalithermotolerans: HYG87_04255
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Entry
HYG87_04255 CDS
T07794
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
meme
Methanobacterium alkalithermotolerans
Pathway
meme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYG87_04255 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meme03021
]
HYG87_04255 (rpoB)
Enzymes [BR:
meme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYG87_04255 (rpoB)
Transcription machinery [BR:
meme03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
HYG87_04255 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_45
Zf_2nd_IFT121
DUF5817
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QUH23040
UniProt:
A0A8T8K7V2
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All DBs
Position
complement(888768..890579)
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AA seq
603 aa
AA seq
DB search
MRKAKIFINGKLIGTCNDPESFVQDMREKRRSGEISHEMNITHYSETDEVYIFNDPGRAR
RPLIVVNEGEPALKEEHISLIKEGELNWEQLLTEGIIEYLDAEEEENAYIAMGLNYLNED
HTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYVSNYGLRTDTRAHLLH
HPQVPIVKTRIIDATGYDKRPSGQNFVVAVMSYEGYNMEDALILNKASIERGLSRSSFFR
SYEASERRYPGGQEDKFEIPEKGVRGYRSEEAYRHLDEDGVVNPESYVSSGDVLIGKTSP
PRFLEEIDEFGTVAERRRETSVTVRHGEKGVVDAVLFTETVEGSRLAKIRVRDQRQPEFG
DKFASRHGQKGVVGLIVSQENMPFTEEGVVPDLVVNPHAIPSRMSVGQVLEMLGGKSGCM
DGRRVDGTPFTGEMESDIKDSLKENGFETAGVESLYNGITGERIEAEIFVGVAYYQKLHH
MTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDK
YEAIVCGECGMVAVYDRIRDKTYCPICGDSDSFPIEISYAFKLLLDELKSLCIFPKLVLE
DKA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaaagctaaaatttttattaacgggaaactcataggaacctgcaacgatccggaa
tcttttgtccaggatatgagggaaaaaagaagatctggagaaatttcccatgagatgaac
attactcattattctgaaactgatgaagtttacatattcaatgatcctggaagagccaga
aggccacttatagtagttaatgaaggagaacctgccttaaaagaagaacatatatctctt
ataaaagagggggaactgaactgggaacaacttttaacggaaggaattatcgaatatctg
gatgcagaagaggaagaaaacgcctatatagccatgggtttgaactatttaaatgaagat
catactcacctggaaatagatccttccaccatgctgggaatttgtgcaggtattattccc
tttgctaaccataattcatctccacgtaataccatggaagcagggatgactaaacaggcc
ttgggtctttatgtttctaactatggattacgtacagatacacgtgctcaccttttacac
catcctcaagtacctattgttaaaaccagaattatagatgccactggttacgataaaagg
ccatctggacagaacttcgtggtagcagtaatgtcttatgaaggttacaacatggaagat
gctcttattttgaataaggcctccatagaaagaggcctttcacgttcatcatttttcaga
tcttatgaagcttctgaaagaagataccctggtggacaggaagacaagtttgagatcccg
gaaaaaggtgtcagaggctacaggtctgaagaagcttaccggcacctggatgaagatggg
gtggtgaatcctgaatcttatgtttcatccggagatgtgttgattggtaaaacttcacct
cctagatttttagaagaaatagatgagttcggtaccgtggctgaacgtcgaagagagacc
tcagtaacagttaggcatggtgaaaaaggagttgtagatgccgtacttttcactgaaact
gttgaaggtagtcgtctggccaaaataagagttagggatcagaggcaacctgaatttgga
gataaatttgcttctcggcacggacaaaaaggggtagtgggactaatagtctcccaggaa
aacatgccttttactgaagagggagtcgtcccggatctggtggtaaaccctcacgctata
ccttccaggatgtctgtgggacaggttttggaaatgttaggaggtaaatccggctgtatg
gatggaagacgcgttgatggtactcctttcacaggtgaaatggaatctgatattaaagat
tccttaaaggaaaatggatttgaaacagcaggtgtggaatcattatataatggaatcacc
ggtgagagaatcgaggcagaaatatttgtaggggtagcttactaccagaagctacaccac
atgaccacggacaaagtatatgcccgttccagaggaccagtacaggtattaaccaggcaa
ccaactgaaggtagagccagggaaggcggtcttcgatttggtgagatggaaagggattgt
ttaattgcccatggtgccgcattagcacttaaagaaagattattggatgaatcggataaa
tatgaagctattgtatgtggtgaatgtggaatggtggcagtatatgatcggataagggat
aaaacatactgccctatctgtggtgattcggattcattccctatagaaatctcatacgca
ttcaaacttttactggacgaactaaaaagcctgtgtatattccccaaacttgttcttgaa
gataaagcataa
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