Methanobacterium alkalithermotolerans: HYG87_05800
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Entry
HYG87_05800 CDS
T07794
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
meme
Methanobacterium alkalithermotolerans
Pathway
meme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG87_05800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meme03019
]
HYG87_05800
Messenger RNA biogenesis [BR:
meme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HYG87_05800
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
HYG87_05800
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_Tnp_IS91
HypA
Zn_ribbon_TiaS
Transposon_TraM
DmmA-like_C
Zn_ribbon_IS1595
ECR1_N_2
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QUH23304
UniProt:
A0A8T8K4B1
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All DBs
Position
complement(1171923..1172492)
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AA seq
189 aa
AA seq
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MKAKSGDFVLPGDILGVSEQFIPAEWTYDDEGEIKSLVVGVVSRDDKNKRISVVPQTDSP
AELKNDTHIMGQIMEVRGQRALVKIDSIKGNRRKLPVSFVGGIHVSQAKKGYLSKLTDAF
HIGDIIEAKITKMVGLDSIDLKTSQNELGVIKAMCTRCRHFMKQTGKNDVTCPHCDNREK
RKLSSNYQV
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctaaatctggagattttgttctaccaggagatattttaggagtcagtgagcaa
tttatacctgctgaatggacgtatgatgatgaaggagaaattaaatctctggttgtaggt
gtagtttctagagacgataaaaataaaagaatatcagtagttccccagactgattctcca
gcagaattgaaaaatgatactcatattatgggtcagattatggaagtaaggggtcagagg
gcgttggttaaaatcgattccattaaaggcaatcgaagaaaactgccggtttcatttgta
gggggaatacatgtatctcaggctaaaaaaggttatttatccaaattaactgatgcattt
catattggggatataattgaagctaaaataaccaaaatggttggattggatagtattgat
cttaaaacctcacaaaatgaacttggggttattaaagccatgtgcacccgctgccgtcac
tttatgaaacaaaccggtaaaaatgatgtaacctgtccccactgtgataatcgtgaaaaa
agaaaattatccagtaattatcaggtttaa
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