Methanobacterium alkalithermotolerans: HYG87_10235
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Entry
HYG87_10235 CDS
T07794
Name
(GenBank) DHH family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
meme
Methanobacterium alkalithermotolerans
Pathway
meme03410
Base excision repair
meme03430
Mismatch repair
meme03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HYG87_10235
03430 Mismatch repair
HYG87_10235
03440 Homologous recombination
HYG87_10235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meme03400
]
HYG87_10235
DNA repair and recombination proteins [BR:
meme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HYG87_10235
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HYG87_10235
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYG87_10235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
QUH24376
UniProt:
A0A8T8K6W1
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All DBs
Position
2042049..2043407
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AA seq
452 aa
AA seq
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MLKSAEDIKVYSHNDCDGISSGAILSSLLDRLDKEHEIEFISLDKLKDLKINNELTIFSD
LGSGQSIDKISTSSSRILVLDHHPPLRSLNYNSKLSGRFLEINPLFYGIDGSYEISGGGM
CYLLAKKFGFYNLSWIGVLSAVGDMQNTRTGKLEGINKSILQDATNHGLVDSAADLSIYG
RQTRPLIIALSYFSDVTLPITNNKTEVILLLKKLGIDRRCDNRLRTLSDLTSDEKTRLFS
ELVKLLSREVPEKYIKYVPKLVTGDYYEFLNEEEKTPLRDASEFSTAVNACSRNKNPEVA
LDILKGDRVLAMDELERLTRKHRQYLAEKIRMIEDNELIVPLNNLQYFHGHGIKSEVVGT
ITGMVLSHGDWRKPIIGFSHVDNGEDLLKVSLRCSRLLAYDGIHFGHIIRKIASKVGGSG
GGHAVACGAYIPSKNQDEFLKIFNSTLKGIIN
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaatcagcagaagatataaaagtctactcccacaatgattgtgatggaataagt
tccggggctattttatcctctcttctggaccgactggacaaagaacatgaaattgaattt
ataagtctggataaactgaaggatctgaaaataaacaatgaactaaccatattttctgat
ttaggctcagggcagagtattgataaaatttctacatcatcatcccgaatactggtactg
gaccaccatccccccctaaggtctttgaattataattctaaactttctggaagattttta
gaaataaaccccctcttctatggtattgatggttcttatgaaatttcaggagggggaatg
tgttatttacttgctaaaaaatttggattttataatttaagttggattggtgttctttct
gcagtgggagacatgcaaaatactcgcactggtaaattagaaggtattaataaatcaatt
ctccaggatgctaccaaccatggcctggtggattctgctgcagatctctctatttatggt
agacaaacccgcccattaattatcgctttatcctatttcagcgatgtaactctccctata
actaataacaaaacagaagtaatcttattattaaaaaaactgggtattgatcgacgatgt
gataatagattacgtaccctctctgatttaacatcagatgagaaaacacggcttttttct
gaactggttaaattactatcccgggaagttcctgaaaaatatatcaaatatgttcctaaa
ctggtaaccggggattattatgaatttttaaatgaggaagaaaaaactccattaagagac
gcttctgaattttcaactgcagtgaatgcatgcagcagaaataaaaatccagaggtggct
cttgatatattaaaaggagatagagtactggccatggatgaactggaacgtttaaccaga
aagcaccgtcaatatctggcggaaaaaatacggatgattgaagataatgaattaattgta
cctctaaataacctgcagtacttccatggtcatggaattaaaagtgaggtggtaggtacc
attaccggtatggttctaagtcatggggattggagaaagcctataattgggttttctcat
gttgataatggagaagatcttttaaaagtttctttgagatgttcccgacttttagcttat
gatggaatacactttggccatattatacgaaaaattgcctctaaagtggggggtagtggg
ggtggacatgcagttgcctgtggggcgtatatcccttctaaaaatcaggacgaattttta
aaaatattcaacagcactctaaaaggcataattaactga
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