Mucilaginibacter empetricola: HDF24_11880
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Entry
HDF24_11880 CDS
T11619
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
memp Mucilaginibacter empetricola
Pathway
memp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
memp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HDF24_11880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
memp03021
]
HDF24_11880 (rpoC)
03400 DNA repair and recombination proteins [BR:
memp03400
]
HDF24_11880 (rpoC)
Enzymes [BR:
memp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HDF24_11880 (rpoC)
Transcription machinery [BR:
memp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HDF24_11880 (rpoC)
DNA repair and recombination proteins [BR:
memp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HDF24_11880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
XPY87805
LinkDB
All DBs
Position
2577087..2581373
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKIKSNFTTITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQAGIKETDGINKMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEELLKRLDLDDLSYNLRHQAANETSQQRKNEALKRLQVVEAFRDA
KNRIENNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQVLMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDATRVVK
GEGLTFYSAEEVIIAYNERKLDLHAFIKVKSLVKERDGSIVNKIIDTTVGRVLFNQHVPA
EVGYINELLTKKSLRDIIGEVVKITGMARAAQFLDDIKELGFRMAFQGGLSFNLKDINIP
AEKVTLIETASKQVEDVMGNYNMGFITNNERYNQIIDIWTRINNRLTANVMEILSTDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGEVDCGTLRGIYTTALKDNEDIVE
PLYDRILGRTSLHDVLDPITNQLLVSAGQDITEEIGKTIENSPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAR
FEGIIEFENVRTVEYKTEDGVVDVVLGRSGEFRITEQGTNKVIVTNNIPYGAYLYVKDGI
KISKGDRICSWDPYNAVIISEFAGVAKFEAVLEGITFREESDEQTGHREKVIIDTRDKTK
NPVIQVADKGGNVIKGYNIPVGAHIAVDEGEKLQTGQVIAKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGQVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VAIEDAGDTRFLEREAVDSWDFMLENDDIFDKKVVTDPGDSASLKSGQIVSVRRLRDENS
VLKRKDLKLVEVRDAIAATSSPILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKKD
LMLGLKENVIVGHLIPSGTGLREYENIRVGSQEEFDRLMASKAEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaatcaaaagtaatttcaccacaattactatcagttta
gcttcacccgaatctattctggaacgttcaagtggtgaggttttaaaaccggaaaccatc
aactacaggacctacaaacctgagcgcgatggtttattctgcgagcgtatttttggtccg
gtgaaagattatgagtgccattgcggtaaatacaaacgtatccgttataaaggtatagtt
tgtgatcgttgcggtgttgaagtaaccgagaaaaaagtacgtcgtgagcgtatgggccat
attaacctggttgttccggttgcgcatatctggtatttccgttcattaccaaacaaaatt
ggttatttactgggcttaccaaccaaaagactggatctgatcatttattatgaaagatat
gtagtaattcaggctggtattaaagaaactgacggaatcaataaaatggatttccttaca
gaagaagaatacctggatgtattagatactttaccaaaagaaaaccaatacctggacgac
aaagatccacagaaatttgtggctaaaatgggtgccgaggctttagaggagttgttaaaa
cgccttgaccttgatgatctgtcttacaacttgcgtcaccaggcagcaaacgaaacttca
caacaacgtaaaaacgaagctttaaaacgtttacaggttgttgaagctttccgcgatgct
aaaaacaggatagaaaataaccctgagtggatgatcgttaagattgttccggttattccg
cctgaattgcgtccgttagtgcctttggaaggtggtcgttttgcaacttcagatttgaac
gatttataccgccgtgtaattatccgcaacaaccgtttaaaacgtttgatcgagattaaa
gcaccggaagttattttacgtaacgagaaacgtatgttacaggaagctgtggattcgtta
ttcgataactcacgtaaagtaaatgctgtaaaaactgaaggtaaccgtgcattgaaatca
ctttcagacattctgaaaggtaaacaaggccgcttccgtcaaaacttattaggtaaacgt
gtggattattcggcacgttcggtaattgttgtagggccaaaccttaaattacacgagtgc
ggtttaccaaaagatatggctgctgagttgtttaaaccatttatcatccgcaaaatgatt
gagcgtggtgtggttaaaacagtaaaatctgccaaaaagattgttgaccgtaaagacccg
ttagtttgggacattttggaaaacgtattaaaaggacaccctgtattattaaaccgtgcg
cctacgctgcaccgtttaggtatccaggcgttccagccaaaattggttgaaggtaaagct
atccagttacacccgttaacttgtacagcattcaacgcggattttgacggtgaccagatg
gccgttcacgtaccactaggtaacgcggcaattttggaagcccaggtattaatgcttgct
tcgcacaacatcttaaaccctgccaacggaacacctattaccgttccatctcaggacatg
gtgcttggtttgtattacataaccaaaggccgtaaaactgatgctacccgcgtagtaaaa
ggtgaaggcttgacattctattctgctgaggaagttatcatcgcttataacgaaagaaaa
cttgatctgcatgcttttattaaagtaaaatctttagttaaagaaagagacggcagtatt
gtaaataaaattattgatactactgtaggccgtgtattatttaatcagcacgttccggca
gaagtaggttatattaatgagctgttaaccaaaaaatcactgcgtgatattattggtgaa
gtagtaaaaattaccggtatggcacgcgctgcccagttccttgacgatattaaggaatta
ggattcagaatggcattccagggtggtttatcatttaacctgaaagatatcaatatccct
gccgaaaaagttacacttattgaaacagcctctaaacaggttgaagatgtaatgggtaac
tataatatgggtttcattaccaacaacgagcgttacaaccagattatcgatatctggacc
cgtatcaacaatcgcttaacagcaaatgtaatggagatcctttctaccgataaccagggc
ttcaactcagtttacatgatgttggattcaggcgcacgtggttctaaagagcagattcgt
cagcttgcaggtatgcgtggtttgatggctaaacctcaaaaatcaggttcaggtggtgag
atcattgaaaacccgatcctttcaaactttaaagaaggtttgtcggtattggaatacttc
atctcaacccacggtgcccgtaaaggtttggcggatacagcgttaaaaactgctgatgct
ggttacttaacccgtcgtttgcatgacgttgcccaggatatgattgttggcgaggtggat
tgcggtaccttaaggggtatttatacaacagcgctaaaagataatgaagatattgttgaa
ccattatacgatcgtattttaggtcgtacttctttacatgatgtacttgaccctattact
aatcaattattagtatcagccggtcaggatatcactgaagaaattggcaaaactattgaa
aactcaccattggaaggtatcgaaattcgttcggtattaacttgcgaaagcaaacgtggt
gtatgtgcattatgctacggacgtaaccttgcaagcggtaaacgcgtgcaaaaaggtgag
gctgttggtgtaattgccgcacagtcaatcggtgagccgggtacacagttaacattacgt
acattccacgtgggtggtaccgcgtcaaacattgctgctgagtcacagatcaacgcaaga
tttgaaggtatcattgaatttgaaaacgttcgtacggttgaatataaaactgaagatggt
gtagtagatgtggttttaggtcgttcgggcgagttccgcatcactgaacagggaaccaat
aaagtaattgttaccaacaatattccatacggtgcttacttgtatgtaaaagatggtatc
aagatcagtaaaggtgaccgtatctgttcatgggatccatataacgcggtaattatctct
gaatttgctggtgttgccaaatttgaggctgtattggaaggtattactttccgtgaagaa
tcagacgaacaaactggtcaccgcgaaaaagttattattgatacccgcgataaaacaaag
aacccggttatccaggttgccgataaaggcggaaacgtaataaaaggttataacattccg
gtaggagcccacattgctgttgatgaaggtgaaaaactacaaacaggacaggttattgcc
aaaattcctcgttcaaccggtaaaacccgggatattacaggtggtttaccacgtgtaacc
gagctatttgaagcacgtaacccttcaaaccctgctgtagtaactgaaattgatggtgtg
gtaactttaggtggtgttaaacgtggtaatcgcgagatcactatcgaatcaaaagatggt
caggttaaaaaataccttgttcctttgtcaaaacacatccttgtacaggataatgacttt
gtgaaagctggtatgccattgtctgatggttcgatatcacctgctgacatcctggctatt
aaaggcccggctgcggtacaggaatacctggtaaatggtatacaggaagtttaccgtttg
cagggtgtgaaaatcaatgacaaacactttgaggtgattgttcaccaaatgatgcaaaaa
gtggctattgaggatgccggcgatacccgtttccttgaaagggaagctgttgacagctgg
gatttcatgctggaaaatgatgacatctttgacaaaaaggttgttactgatccgggagat
tcagcaagcttaaaatctggtcagattgtttcagttagaaggttaagagacgaaaattca
gttttaaaacgtaaagatttaaaattggttgaagttcgtgacgctatcgctgcaacatca
agcccgattctgcaaggtatcaccagagcttcattaggcactaaatcgtttatctcggca
gcatcattccaggaaactaccaaggttctgaatgaagcagcaattgcaggtaaaaaagac
ttaatgcttggcttgaaagaaaacgttattgttggtcacttaattccgtcaggaaccggt
ttacgcgaatacgaaaatatccgtgtaggctctcaggaagaatttgatcgcctgatggct
tcaaaagctgaagaagtagaagcataa
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