Candidatus Moranella endobia PCIT: MEPCIT_431
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Entry
MEPCIT_431 CDS
T01562
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
men
Candidatus Moranella endobia PCIT
Pathway
men03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
men00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MEPCIT_431 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
men03021
]
MEPCIT_431 (rpoB)
03400 DNA repair and recombination proteins [BR:
men03400
]
MEPCIT_431 (rpoB)
Enzymes [BR:
men01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MEPCIT_431 (rpoB)
Transcription machinery [BR:
men03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MEPCIT_431 (rpoB)
DNA repair and recombination proteins [BR:
men03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MEPCIT_431 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
NAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
AEI75053
UniProt:
F7XY77
LinkDB
All DBs
Position
complement(499064..503092)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFKKFIEQDPEGQYGLEAAFRSIFPVQ
SYSGNAALQYVSYRLGEPVFDVKECQIRGITFSVPLRVKLRLITFDREAPAGTVQDIKEQ
EVYMGEIPFMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDHLFVRIDRRRKFPATIILRALNYSTSQILDTFFEKVVYEIYHKKLQME
LIPERLRGETASFDITANGTVYVEKGRCITTRHIRQLEQDHVNKIVVPAEYIVGKVVAKD
YIDENTGEIIVPANMALNLDLLAKLMQLGFKRIETLFTNDLDHGAYISETLRIDQTNDRL
SALVEIYRVMRPGEPPTRETAEHLFDNLFFSDDRYDLSAVGRMKFNRSLLRENIEGSGIL
SQDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDIDTLLPQDIINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVLKGVVT
DEINYLSAIEEGNFVIAQANTNLGEDGRFVDDLVTCRSRGESSLFNRDQIDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAIPTIRAEKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIIINVNPDEMYPGEAGIDIYNLTKYIRSNQNTCINQKPCVSLDEQVERG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQDDLFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDKSGIVYIGAEVTGCDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVIDVQVFTRDGIEKDKRALEIENMQLKQAKKDL
TEELQIFEAGLFARIHDVLISGGIETDKLDNLTHDHWLELKLADEDKQNQLEQLAAQYEA
LKYDFEKKLEAKSRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGVPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDQINTMLKQQTEVAK
LRDFIQKAYNLGDNLRQTVDLNTFSDEEVLRLAENLKKGMPISTPVFDGAKEKEIKELLQ
FSGLLTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSMVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHMMEPGMP
ESFNVLLKEIRSLGINIELEEH
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgaaaaaaaacgcattcgtaaggattttggcaaacgtccgcaa
gttttagacgttccctatctcctctccatccagctagactcttttaagaagtttatcgag
caagacccggaaggtcagtacgggctggaagcagcttttcgttccatatttccagtacag
agctacagcggcaacgctgcattgcaatatgtgagttatcgtcttggcgagcctgttttt
gatgttaaagagtgccagattcgtgggataacgttttccgtaccgctgcgcgtgaagtta
cgccttatcacttttgatcgcgaagcaccggctggtacggtacaagatatcaaggagcag
gaagtctacatgggcgaaataccgttcatgactgacaatggtacctttgtcatcaacggc
accgaacgtgtgattgtttcccagctacaccgtagccccggcgtattttttgacagcgac
aagggtaaaacacactcctctggtaaagtactttacaatgcccgtattattccttaccga
ggatcttggttggattttgaattcgaccctaaggaccatttattcgtccgtatagaccgc
cgccgaaaatttccggcgaccattattctgcgagcgcttaattatagtactagccagatc
ttggatacgttcttcgagaaagtagtctacgaaatttaccataaaaagctgcagatggag
cttatacctgagcgcttacgtggtgaaacagcatcatttgatattactgccaacggcacc
gtttatgttgaaaaaggacgctgtataaccacacgccatattcgtcaattagaacaagat
cacgtcaataagatcgtagtgccggccgaatacattgttggcaaagtggtagcaaaagat
tacatagatgaaaacacgggtgaaattatcgtgccagcaaatatggcactgaatctagat
cttttggctaaactgatgcaattgggtttcaagcgtattgagactctgttcactaacgat
cttgaccacggcgcctatatttcagaaacattgcgcattgatcaaaccaacgatcgcctg
agtgcgttggtggaaatataccgtgtgatgcggccaggcgagccacctactcgcgaaact
gccgagcatttatttgacaatctattcttctcggacgatcgttacgatctttctgcagta
ggacggatgaaattcaaccgttcgctgctacgtgaaaatatcgaaggttctggcatcctt
agtcaggacgatattattgacgtaatgaaaaaactcatcgatatccgcaacggtaaaggt
gaagtcgacgatattgaccacttgggtaatcgccgcatccgttccgtgggagaaatggcg
gaaaaccaattccgagttggtctggtgcgcgtggagcgcgcggtaaaagagcgtctgtct
ttaggagatatagatactttactgccgcaggacataatcaacgccaaacctatttcagct
gcggtgaaagagttttttggttccagccagctgtcgcagtttatggatcagaataaccca
ctttccgaaattacccacaagcgccgcatctccgcgctaggtccgggcggtctaacccgt
gagcgtgcaggatttgaagtgcgcgacgtgcatccaacccattacggccgagtgtgtccc
atagaaacaccagaagggccgaacataggtcttatcaactcgctctccgtatatgcacag
actaacgaatacggtttccttgaaactccctatcgacgtgtgctgaaaggtgtggtaaca
gacgaaatcaattatctttctgcgattgaagaaggcaatttcgttatcgcgcaggctaat
accaaccttggcgaagatggtcgttttgtcgatgatttggtgacctgccgcagccggggc
gaatctagcttgtttaaccgtgatcagattgattatatggacgtatcaacccagcaggtg
gtatcggtcggcgcatcactgattccattcctggagcacgacgacgccaaccgagcattg
atgggtgcgaatatgcagcgtcaggcgataccaactatacgtgctgaaaagccgctagtc
ggtaccggtatggagcgagcggtggcagttgattccggcgtcactgccgtggctaaaaga
ggaggaacggtacagtacgtggacgcctcacgtatcataattaacgttaatccggatgaa
atgtatccgggagaagccggcattgatatttacaatctgaccaaatacattcgttccaac
cagaacacttgtataaaccagaaaccttgcgtttcattggatgagcaagttgaacgcggt
gacgtgctagcagacggtccgtcaacagatcttggtgagctggcgctaggtcagaatatg
cgcatcgcttttatgccatggaacggttataactttgaagactcgatgttggtctcggag
cgcgtagtacaggacgatctgttcaccaccatccatattcaggaactggcatgcgtatca
agagatactaagcttgggccggaggagattacagcagatattcctaacgttggtgaagct
gctctctccaaactagataagtccggtatagtttatataggtgcggaagttaccggctgt
gatattctggtaggtaaggtaacaccaaaaggtgaaacccagctgacgccagaagagaaa
ctattgcgcgccatctttggtgaaaaagcctccgacgttaaagactcttcactacgcgtg
ccgaacggcgtttacggtactgttattgatgtgcaggtgtttacccgcgatggcatagaa
aaagacaagcgggcattagaaatagagaatatgcagctaaaacaggccaaaaaagacttg
accgaagaattacaaatatttgaagccggcctgtttgcccgtattcacgatgttctgatt
tccggcggcatcgaaacggataagctggacaacctaacccatgatcactggcttgaactg
aaactagcagatgaagataagcagaatcagctcgaacagctcgcagcgcaatatgaagct
cttaagtacgatttcgagaagaagctggaagccaaaagccgtaagatcacccagggtgat
gatttagcccctggcgtgctgaaaatagtcaaggtgtacctagcggttaaacgtcaaatt
cagccgggcgacaaaatggctggtcgtcatggtaacaagggcgttatctccaagatcaat
ccgatcgaagatatgccgtacgatgaaaacggcgtaccggtggatatcgttctgaacccc
ctgggggtaccatcgcgtatgaacattggccagattctggaaacccatttgggtatggca
gccaaaggtattggcgatcagatcaatactatgctcaagcagcaaacagaagttgctaaa
ctgcgtgattttatccagaaggcctataatttaggtgacaacttgcgccagacggtggat
ctcaacacattctccgatgaagaagtgttgcgtctagcagaaaatttgaagaaaggtatg
cctatatcaacgccagtgtttgatggggctaaagagaaagaaataaaggagcttctgcag
ttcagtggcttgctgacctcaggtcagataacgttgtttgatggtcgtaccggagaacaa
ttcgaacgccaggttactgtaggttatatgtacatgctgaaacttaaccatctggttgat
gacaagatgcatgcgcgttccaccggctcgtacagtatggttacccagcagccgctaggg
gggaaagctcagttcggtggccaacgcttcggtgagatggaagtttgggcgctggaagcc
tacggcgcggcgtacaccttgcaggaaatgcttaccgttaagtcggatgatgttaacggt
cgtaccaagatgtacaaaaacattgttgatggtaatcacatgatggaaccagggatgccg
gaatcttttaacgtcttactaaaagaaatccgctcgctgggcatcaatatcgagctggaa
gaacactaa
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integrated database retrieval system
