Methanoplanus endosymbiosus: L6E24_04780
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Entry
L6E24_04780 CDS
T08358
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mend
Methanoplanus endosymbiosus
Pathway
mend03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mend00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L6E24_04780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mend03019
]
L6E24_04780
Messenger RNA biogenesis [BR:
mend03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L6E24_04780
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
UUX93444
UniProt:
A0A9E7PR42
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All DBs
Position
complement(1147256..1148602)
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AA seq
448 aa
AA seq
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MEVEIIAVGGYGEVGRNMTAVRVGKDIVIFDMGLRLDQIMIHEDAEVENMHSLDLIEMKA
IPDDTIMNTVEGSVKAIVCTHGHLDHIGAIPKLAHRYNAPIIGTPYTAKLIEQQIEGEKK
FGVNNKVFALNAGKKYRYQITPDISLEFVNVQHSIIDTAMAVLHTPAGIIVYANDFKLDR
TPVLGNPPDFARMAELGREGVLALIVESTNVSLPGRCPSEKVAHKLVRDVMTSYEDDKCA
MMVSTFSSHIARVKTIAECAHEIGRKPVLLGRSMERYSSTAEQMKLVGFPDTVSMYGNRK
TVDRMFRRIMKEGKDKYVPIVTGHQGEPGAILTRLAAGNTPYRVDKGDKIMYSAKIIPNP
MNYGQRYHQETFLKMKGARIFEELHVSGHAQKEDHYEVIHLFNPQHIIPSHGDIDMTGAY
VRFAEDCGYTLNNDIHILRNGMRVNVSK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagaaataattgccgtgggcggttatggagaagtcggacgtaatatgacagcc
gtccgcgtaggaaaggatatagtaatttttgatatgggtcttcgccttgaccagataatg
attcatgaggatgctgaagtagaaaatatgcattcccttgatctcattgagatgaaggct
attcctgatgacactattatgaatactgtcgagggcagtgtgaaggctatagtctgcaca
cacggacatcttgaccatatcggtgcaattccaaagcttgcgcaccgctataatgcccca
atcatcggaacaccctacacagcaaaacttatcgaacagcagattgaaggcgagaagaag
tttggtgtcaataataaggtattcgcgctgaatgccggaaagaagtacaggtaccagata
actccggatataagccttgaatttgtcaatgtccagcacagtataattgatactgcaatg
gcggttttacatacccctgccggaattattgtatatgcaaacgatttcaagcttgacaga
acaccagtgcttggaaacccgccggactttgccagaatggcagaacttgggcgtgagggt
gttttagcactcattgttgagagtacaaatgtaagccttccgggaagatgcccaagtgag
aaggttgcccataagcttgtcagggatgttatgacaagttatgaggatgataaatgcgcc
atgatggtcagcactttttcatcccatatcgcccgtgtaaagaccattgcagagtgtgcc
catgagatcggcagaaaacctgtgctgctcggacggtcaatggagagatattcctcaaca
gcagagcagatgaagctggtaggatttccggatactgtctcaatgtatggcaacaggaag
actgttgaccggatgttcagaaggattatgaaggagggcaaggacaagtacgtgccaatc
gtcaccggacatcagggtgagccgggtgcaatattaacaaggcttgcagccggaaatacg
ccttacagggtcgataaaggtgataagatcatgtacagtgcaaagattattcctaatccg
atgaactatggtcagagatatcatcaggagacattcctgaagatgaagggtgcacgtatc
tttgaagagcttcacgtgagcggtcacgcccagaaggaagatcattatgaggtgattcat
ctcttcaatccgcagcatatcatcccgtcccacggtgatattgatatgaccggggcatat
gtccggtttgcagaggattgcggatataccttaaataatgatatacacatcttaagaaac
ggtatgagagtaaatgtcagtaaataa
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