Methanoplanus endosymbiosus: L6E24_05265
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Entry
L6E24_05265 CDS
T08358
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mend
Methanoplanus endosymbiosus
Pathway
mend03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mend00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L6E24_05265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mend03019
]
L6E24_05265
03009 Ribosome biogenesis [BR:
mend03009
]
L6E24_05265
Enzymes [BR:
mend01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L6E24_05265
Messenger RNA biogenesis [BR:
mend03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L6E24_05265
Ribosome biogenesis [BR:
mend03009
]
Prokaryotic type
rRNA helicases
L6E24_05265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UUX93526
UniProt:
A0A9E7TMQ0
LinkDB
All DBs
Position
complement(1249420..1251009)
Genome browser
AA seq
529 aa
AA seq
DB search
MSSFLKFKELDISNEILKAIEDMGFEEPTPIQNISIPLIMSGKDITAQAQTGTGKTAAFA
IPLLEKIDPNKLAVQAIVLSPTRELTIQIAEEFNRLIKYMDDIKILPIYGGQPIERQISA
MRRGVQVIIGTPGRVIDHLGRKTLSMSEVNFVVLDEADQMLDMGFREDLEEILGYAPKER
QTVLFSATMPGPILRISKSFQNNPQFVSITPKTLTVPSIEQFYIEVRESEKADLLCRFID
IKGPGQAIVFCNTKKRVDELSSVIRSRGYFAEGLHGDLKQQQRDRVMGKFRNGTIDILIA
TDVAARGIDVEDIDTVYNYDVPQDTEYYIHRIGRTGRAGRSGTSYTFVGPREYGKLKMLK
RISQSGLKRIQKPGLKDVENSRVERYIETVKEIMSEEDSGCYLTVVERFLEENDCDASDV
AAAMLKIYMGSHKVKTDEDSYEETGGETGMVRFFISIGKNKRIKPGDIVGAIAGETGIPG
NSIGAIDIYENFSFVDIPLKFAKEVHNIMGGRTIKGCDIKFEPAKKAEY
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttttttgaaatttaaagaacttgatatttcaaacgaaatacttaaagctata
gaagatatgggttttgaagaaccaacgcccatacagaatatttcaattccattgatcatg
tccggaaaggacataaccgctcaggcacagacaggtacaggcaaaacagcagcatttgca
attcctcttcttgagaaaattgatcctaataaactcgcagtccaggcaattgttctttca
cctacgagagagcttacaatccagatcgcagaagagttcaatcgcctgattaaatatatg
gatgacataaagatccttccaatctacggcggtcagccaattgaaaggcagatctcagct
atgagacgtggagttcaggtcataatcggcactccgggaagggttattgaccatctcgga
agaaagaccctctcaatgtctgaagttaactttgttgtccttgatgaagctgaccagatg
cttgatatgggatttagggaagacctcgaagaaattcttggttatgcaccgaaagaacgc
cagaccgttctcttctcagcaacaatgcccggacctattctcaggatctcaaaatccttc
cagaacaatccacagtttgtaagcatcactccaaagacacttactgtcccttcaattgaa
cagttttacattgaagtaagggagagcgagaaggctgatcttctctgccgttttattgat
atcaaagggccgggacaggcaatcgtattctgcaataccaaaaagagagtggatgaactg
tcatcagttatacgctcacgcggatatttcgcagaagggcttcacggagatctcaaacag
cagcagagggatcgtgtgatgggcaagttcagaaacggaacaattgatattctcattgca
accgatgttgctgcaagaggtattgatgttgaagatatcgacacagtttataattacgat
gttcctcaggatactgaatactatattcacagaatcggaaggaccggacgtgcaggaagg
tcaggtacatcatacacatttgtcggcccaagggaatacggcaaattaaagatgctcaag
aggatctcacagtcaggacttaagagaatccagaagccgggcttaaaggatgtcgaaaac
agccgtgttgagagatatatcgagactgtaaaggaaattatgtctgaggaagattccgga
tgctacctcactgttgttgaacgtttcctggaagagaatgactgtgatgcctcagatgtt
gccgctgcaatgcttaaaatctatatgggttcacataaggtcaagaccgatgaggacagt
tacgaagagaccggcggggagactggcatggtaaggttcttcatcagcatcggaaagaac
aagaggattaagccgggcgacatcgtcggtgcaatagccggagagaccggaattccgggc
aactcaattggtgcaattgatatctatgagaacttctcatttgttgatatccctctgaag
tttgcaaaagaggttcataatatcatgggcggccggacgataaagggctgtgatataaag
tttgaaccggccaagaaggctgaatattaa
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