KEGG   Mycetohabitans endofungorum: IHE33_01325
Entry
IHE33_01325       CDS       T11976                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
menf  Mycetohabitans endofungorum
Pathway
menf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:menf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    IHE33_01325 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery
    IHE33_01325 (rpoC)
   03400 DNA repair and recombination proteins
    IHE33_01325 (rpoC)
Enzymes [BR:menf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     IHE33_01325 (rpoC)
Transcription machinery [BR:menf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     IHE33_01325 (rpoC)
DNA repair and recombination proteins [BR:menf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      IHE33_01325 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C PYNP_C
Other DBs
NCBI-ProteinID: WXK22165
LinkDB
Position
276431..280681
AA seq 1416 aa
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSIDIDAQVEQLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVESQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINAKGEGMTFTGVGEVLRAYENK
EVELASRVNVRITEMVVNEDRSDGAPKFVPKVSLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRRCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
EAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSESVGKAMMEQLSTEPVVDRGGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSQGVAMKALVEGGEVVEAL
RDRILGRVAVADVVDPETQETLYESGTLLDETAVEEIERLGIDEVRVRTPLTCETRYGLC
AKCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTARFTATMRYVTNAKGEQIVISRSGEVVIADDHGRERERHKIPYGATLLQLDGVQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDEVTGLSTLVVIDSKRRGSQSSKS
VRPQVKLLDATGDEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLDGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKET
ADRERFEQIAAEEEHASPFDFATPETPVEHPHSENE
NT seq 4251 nt   +upstreamnt  +downstreamnt
atgaaagctttgctcgatctattcaagcaagtccaacaagaagaagtttttgatgcgatc
aagatcggtctggcctcgccggacaagattcggtcgtggtcgttcggtgaagtgaagaag
ccggagaccatcaactaccgcacgttcaagccggagcgcgatggtttgttctgcgcgaag
atcttcggcccaatcaaggactacgagtgcttgtgcggtaagtacaagcgcttgaagcac
cgcggcgtaatctgcgagaagtgtggcgtcgaggtgacgctcgcgaaggtgcgccgcgag
cgcatgggccatatcgagcttgcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtgctcgacatgacattgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtgatcgatccgggcatgacgccgctcaaggcgcggcagatcatg
accgaagaggattactacaataaggtcgaagagtacggtgatgagttccgcgccgaaatg
ggcgcggaaggtgtgcgcgagctgctgcgctcgatcgacatcgatgcgcaggtcgagcag
cttcgcaccgagctgaagaacaccggctccgaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggcattccagcgttcgggcatcaagccggactggatgattctcgag
gtgctgccggtgctgccgccggagttgcgtccgctggtgccgctggacggcggccggttc
gcgacgtcggacctgaacgacctgtatcgtcgcgtgatcaaccgtaacaaccggttgaag
cgtctgcttgagctgaaggcgcccgagatcatcgtgcgcaacgaaaagcggatgttgcag
gaagcggtagactcgttgctcgacaatggacgccgcggcaaggcgatgaccggcgccaat
aagcggccgctgaagtcgcttgccgacatgatcaagggcaagggtggccgcttccgccaa
aacctgctcggcaagcgcgtcgattactcgggccgctccgtgatcgtcgtcggtccgacg
cttaagcttcaccagtgtggcttgccgaagctgatggcgctcgagttgttcaagccgttc
atcttcaacaaactcgaggtgatgggcgtcgcgacgacgatcaaggcggcaaagaaggaa
gttgaaagccagacgccggtcgtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgttgaaccgcgcgccgacgctgcaccgcctggggattcaggcgttcgagccggta
ctgatcgaaggcaaggcaatccaactgcacccgcttgtgtgtgcggcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgctcgaggcgcagatggaggcg
cgcacgctgatgctcgcgtccaacaacgtgttgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggcctgtactacgcgacgcgcgaagcgatcaatgca
aagggtgaagggatgaccttcaccggcgtgggcgaagtcctgcgagcgtatgagaacaaa
gaagtggagttggcctcgcgcgtgaacgtgcggatcaccgagatggtggtcaacgaggat
cgctccgacggtgcgccgaagtttgtgccgaaggtctcgctgtatgcgaccaccgtcggc
cgtgcgatcttgtcggagatcctgccgccgggcctgccgttcagcgtgctgaacaagccg
ctgaagaagaaggagatctcgcggctgattaacacggccttccgccgttgcggcctgcgc
gagacagtgatcttcgccgaccagctgatgcagtccggattccggctggccacgcgtgcc
gggatctcgatctgcgtcgacgacatgctcgtgccgccgcaaaaggaaacgatcgtgggc
gaggccgccaaaaaggtcaaggaatacgatcgccagtacatgtcaggcctggtcaccgcg
caggaacgctacaacaacgtggttgacatctggtcggcgacgtccgagtcggtcggtaag
gcgatgatggagcagctgtcgaccgaaccggtggtagaccgcggcggcaacgagacgcgc
caggagtcgttcaactcgatctacatgatggcggactccggtgcccgtggttcggcggtg
cagattcgccaattggcgggtatgcgtgggctgatggccaagccggatggctcgatcatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgctgcagtacttcatctcg
acgcacggtgcacgtaagggcttggcggataccgcgttgaagacggcgaactcgggctac
ctgacccgtcgtttggtcgacgtgacgcaggacctagtggtggtcgaggacgactgcggc
accagccagggcgtggcaatgaaggcgctggtcgaaggcggtgaagtcgtcgaggcactg
cgcgaccggattctcggccgcgtcgcggtggccgacgtcgtcgatccggaaacccaggag
acgctgtacgaatcgggcacgttgctggacgaaaccgcggtcgaggagatcgagcgcctc
ggtatcgatgaagtgcgcgtgcgcacgccgttgacctgcgaaacgcgctacgggttgtgc
gcgaagtgctatggtcgcgacctgggacgcggctcgctggtgaacgtgggcgaggcggtc
ggcgtgatcgccgcgcagtcgatcggtgagccgggtacgcagctgacgatgcgcacgttc
cacatcggtggtgcggcttcgcgcgcggcggtggcctctagcgtcgaggcgaagtccaac
ggtaccgcgcgcttcaccgcgacgatgcgctatgtcacgaacgcgaagggcgagcagatc
gtcatttcgcgctccggcgaagtggtcatcgcggacgaccatggccgcgagcgcgaacgc
cataagattccgtacggtgcgacgctgctgcagctggacggcgtgcagatcaaggccggt
acgcagctcgcgacgtgggacccgatgacgcgtccgatcatcaccgagtacggtggcacg
gtgaagttcgagaacgtcgaagagggcgtgaccgtcgcgaagcagatcgacgaagtgacc
ggcctgtcaacgctcgtggtgatcgactccaagcgccgcggctcgcagtcgtccaagagc
gtgcgtccgcaagtgaagctgctcgatgcgaccggcgatgaagtgaagattccgggaacc
gagcatgcggtgcagatcggcttccaggtcggtgcgctgattacggtaaaggatggtcag
caagtccaagtcggtgaagtgctggcgcggattccgaccgagtcgcagaagacgcgtgac
attaccggcggtctgccacgggttgccgagttgttcgaggcgcgttcgccgaaggatgcg
ggcatcctggcggaagtcaccgggacggtgtcgttcggcaaggacacgaagggcaagcag
cgcctggtcatcacggatctggacggcaatcagcacgaattcctgatcgcgaaggaaaag
caggtgcttgtgcacgatggccaggttgtcaacaagggcgagatgatcgtggacgggccg
gccgatccgcacgacatcctgcgcttgcagggcatcgaggcgctgtcacgctacatcgtt
gatgaagtacaggacgtgtatcgcttgcagggcgtgaagatcaacgacaagcacattgaa
gtgatcgtgcgtcagatgctgcgccgcgtgcaaatcgtcgacaacggcgatacgcggttc
atcccgggcgaacaagtcgagcgttccgacatgctcgacgagaacgaccggatgatcgcg
gaagacaagcggccagcaacctacgagaacgtgctgctgggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctcggccgcatcgttccaggagacgacgcgcgtgctgaccgaa
gccgcgatcatgggcaagcgcgacgacctgcgtggtctgaaggagaacgtgatcgtcggt
cgcctgatcccggccggtacggggcttgcgttccacaaggcgcgcaagagcaaggagacg
gcggatcgcgagcgttttgagcagattgcggcagaggaagagcacgcgagcccattcgac
ttcgccacgccggaaacgccggtcgagcatccgcattcggaaaacgagtga

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