Mycetohabitans endofungorum: IHE33_05375
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Entry
IHE33_05375 CDS
T11976
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
menf Mycetohabitans endofungorum
Pathway
menf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
menf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IHE33_05375 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
menf03021
]
IHE33_05375 (rho)
03019 Messenger RNA biogenesis [BR:
menf03019
]
IHE33_05375 (rho)
Transcription machinery [BR:
menf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IHE33_05375 (rho)
Messenger RNA biogenesis [BR:
menf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IHE33_05375 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WXK22909
LinkDB
All DBs
Position
complement(1168579..1169841)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKSQHVSALIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLSLERDVRGEENITSRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKSNHPDVTLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFIHDMDEIEAMEFLLDKLKQTKSNSEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagctcaagtcgcaacacgtatccgctttgatcgaaatggccaatggc
ctggagatcgaaaacgcgaaccgcctgcgcaaacaggagttgatgttcgcaattctgaaa
aagcgcgccaagacgggtgaaaccatcttcggcgacggcaccctcgaagtgctgccggac
ggttttggctttttacgctcgcccgagacatcgtatctggcaagcaccgacgacatctac
atcagtccgtcgcaaatccgccgtttcaacctgcataccggcgacacgatcgaaggcgag
gtacgtacgccgaaagacggcgagcggtatttcgcgctggtcaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgtcgctcgagcgcgacgtgcgcggcgaggaaaatatcaccagccgc
atcatcgacatgattgcaccgatcggcaaaggccagcgcggactgctggtcgcgtcgccg
aagtcgggcaagaccgtgatgctgcagcacatcgcgcatgcgattaagtcaaaccatccg
gacgtcacattgttcgtgctgctgatcgacgagcgcccggaagaagtcactgaaatgcag
cgctcggtggccggcgaagtgattgcgtccacgtttgacgaacccgcgtcgcgccacgta
caggtcgccgaaatggtaatcgagaaggccaagcggctggtcgagatgaagcacgacgtg
gtgatcctgctggactcgattacgcggctcgcacgcgcctacaacaccgtggtgccggcc
tcgggcaaggtcttgaccgggggcgtcgacgccaatgcgctgcaacgcccgaaacgcttc
ttcggtgcggcgcgcaatgtggaagaaggtggttcgctgacgatcatcggcactgcgctg
attgaaaccggcagccgcatggacgacgtgatctatgaggagtttaagggcaccggcaac
atggaggtgcatctggaacggcgcctcgcggaaaagcgggtctatccgtcgatcaacctg
aacaaatcgggcacccgtcgcgaggaattgctgatcaagccagaaatcctgcagaagatt
tgggtgctgcgtaagttcatccatgacatggatgaaatcgaagccatggaattcctgctc
gacaagctgaagcagaccaagagcaattcggagttcttcgacatgatgcgccgcggcggt
taa
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