Metabacillus endolithicus: MVE64_13810
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Entry
MVE64_13810 CDS
T09915
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
menl
Metabacillus endolithicus
Pathway
menl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
menl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MVE64_13810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
menl03400
]
MVE64_13810 (mfd)
Enzymes [BR:
menl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MVE64_13810 (mfd)
DNA repair and recombination proteins [BR:
menl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MVE64_13810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UPG61751
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All DBs
Position
2700216..2703743
Genome browser
AA seq
1175 aa
AA seq
DB search
MNSLQQYFYHNDDFKTVVSGIEEGLKEQLVAGLSGSARTVFTASLYHELNKSILIVTHNL
FQAQKVYEDLLNLIKEDVYLYPVNDLIASEVAIASPELKSQRIEVLNRLSEGKQSIVVVP
VAGVRRLLPPKQLWKQKQFNLSLGQDIDLDHYIQDFISLGYERVDMVSSPGEFSVRGGII
DIYPLTEENAVRIELFDTEIDSIRSFNIDDQRSVEMLKTITIGPAVEILIDAEARNRSIE
GIEAGLAKNLKKLKNEQQKEMLLEHIQYDLERLRNNQFSHDLFKYSSLLYEQPTSLLDYF
PTDSIVILDEISRIHETYDQLEREEAEWFTGLLEEGKILQEIKVSHSYMDVMTKSKQPSI
YLSLFLRHVPHTSPQNILNISCKQMQNFHGQMHVLKNELERWQKSQYSVVFLGVNEERTK
KLEDVLEDYEIQAKILGQNDPLIAGQISVVQGDLQTGFELPMQKLAVITEEELFKKRVKK
QVRRQKLSNAERIKSYSELEVGDYVVHVNHGIGKYLGIETLEINGIHKDYLNIRYQGSDQ
LYVPVEQIDQVQKYVGSEGKEPKIYKLGGNDWRRVKKKVESSVQDIADDLIKLYAEREAS
EGYSFSPDGEMQKEFELAFPYQETEDQIRSIQEIKKDMERLRPMDRLLCGDVGYGKTEVA
IRAAFKAIADGKQVALLVPTTILAQQHYETVRERFQDYPISVGLLSRFRSRKEITETTKG
LGNGTVDMVIGTHRLLSKDIKYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVRESIEREMSRGGQVFFLYNR
VEDIERKAEEISMLVPDARVTYAHGKMTENELESVMLSFLEGEYDVLVSTTIIETGVDIP
NVNTLIVNDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERQTDKPKQKAIDV
EIDLQVDAYLPESYITDGRQKIDMYKRFRSITELQELEELQEEMIDRFGEYPVEVDYLFQ
IAKLKVFAIQERVELIKQDKEVITILIEEEASNLIDGQKLFDLSNKYQRIVGLGMEGSKL
KLTVNTKGLAVEKWLGITTELLNGLSQVKKEEILQ
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgaatagtttgcagcaatatttttatcataatgatgattttaaaaccgttgtatctggt
attgaagagggattaaaagaacagcttgttgcgggcctatccggttcggcaagaactgtt
tttacagcatcactgtatcatgaactaaataagtcaatcctgattgtgacacataacctt
ttccaagctcaaaaagtctatgaggatttgttaaacctaattaaagaggatgtgtaccta
tatcctgttaatgatttaatagcatcagaggtagctattgcaagccctgaattaaaatca
caaagaatagaagttcttaaccgactgtcagagggtaaacaatctattgtagttgtacca
gtagctggtgttaggcgattgcttcctccaaaacagttatggaagcaaaagcaattcaat
ttatcattgggacaagatattgaccttgaccactatattcaagattttatttcgttagga
tatgaaagagtagacatggtcagctctcctggagaatttagtgttcgtggtggaattatt
gatatttatcctttaactgaagaaaatgcagttcgaattgaactatttgatactgaaatt
gactctattcgttctttcaatatagatgatcaaagatcagtagaaatgttaaaaacgata
acaattgggcctgctgttgaaatactaatagatgcagaagcaagaaatcgaagcatagaa
ggtattgaagccggcttagcaaagaatttaaaaaagctaaaaaatgagcaacagaaggaa
atgcttcttgagcatattcaatatgacttggagcggttacgaaataaccaatttagtcat
gatctatttaagtattcttctctcctatatgagcagcctactagtttactagattatttt
cctactgattcaatcgtcattttggatgagatcagtagaattcacgaaacatatgatcaa
ttagaacgggaagaggcagagtggtttaccggtttacttgaagaagggaaaattctacag
gaaataaaggtttcacattcgtatatggatgttatgacaaaaagtaaacaaccttctatc
tatctttctcttttcttaagacatgtaccacatacaagtccacaaaatatattaaatata
tcttgtaaacaaatgcaaaattttcatggtcagatgcatgttttaaagaatgaacttgaa
cgttggcaaaaatctcaatattctgttgtgtttttaggcgtaaatgaggaaagaacaaag
aagcttgaggatgtattagaggactatgaaatacaggcaaagatattggggcaaaacgat
cccttaattgctggtcaaatttcagttgttcaaggagatttacaaacaggatttgaacta
ccaatgcaaaagctcgctgtcattacggaggaagagctttttaagaaacgtgtaaaaaaa
caggttagaaggcaaaagctttcgaatgcagagcgaataaagagctattcagaactagaa
gttggcgattatgttgtccatgttaatcatgggattggtaaatatcttggtattgaaaca
cttgaaataaacgggattcacaaagattatttaaatataagatatcagggcagtgaccag
ctctatgtaccggttgaacagattgatcaagtgcaaaaatatgttggctctgaaggcaag
gagcctaagatctacaagcttggaggaaatgactggcgcagggttaagaagaaggttgag
tcctctgttcaagacattgcagatgatttaatcaaattgtacgccgaacgcgaagcaagt
gaagggtatagcttctctccagatggtgaaatgcagaaagaatttgaattagcctttcca
tatcaagaaacagaagatcagatacgttccattcaagaaattaagaaggatatggaacgt
cttcgtccaatggaccgccttttatgtggagatgttggatatggaaaaacagaggttgcg
atacgtgcagcttttaaagctattgcagatggtaaacaagttgcattgctagttccaacg
actattttagctcaacaacactatgaaaccgttagagaacgttttcaagactatcctatt
agtgttggtctcttaagtcgctttagatctagaaaagagattacagaaacaacaaaagga
ttgggcaatggaactgttgatatggtcattgggacacatcgccttctgtcaaaagatata
aaatataaggacctaggattgctaatcattgatgaagaacaacgttttggtgtgacacat
aaggaaaagatcaaacaattaaaggcgaatgtggatgtgcttacgttaacagcaactcca
attccaagaaccttacatatgtccatgctaggagtaagggatttatctgttattgaaacg
ccaccagaaaatcgttttccggttcaaacttatgttgttgaatataatggtgcacttgtt
cgagagtcaattgaaagagaaatgtctcgtgggggtcaagttttctttctatataaccgg
gtagaggatattgaaagaaaagcagaggaaatttctatgctagtaccggatgcaagggtc
acatatgcacacgggaaaatgactgaaaatgagttagaatctgtcatgttaagcttcctt
gagggagaatatgatgtgttagtaagcacaactattattgaaacaggtgtagatattcct
aacgttaacacgcttattgttaatgatgcagataagatgggactatcacagctttatcag
ctgagaggacgagtaggtcgatctaaccgagtagcttatgcgtattttacgtatcgaaaa
gataaggtgcttacagaagttgctgaaaaaaggttacaagctattaaagaatttaccgaa
ttaggttccggctttaagattgcaatgagggatctttctatcaggggagcagggaatctt
ttaggggctcaacagcatggcttcattgattctgttggttttgatttgtattcacaaatg
ctcaaagaagctattgaagaaagacaaacagataaaccaaaacaaaaagcaatagatgtt
gaaattgatcttcaagtggatgcatatttacctgaatcatatattacagatggtcgtcaa
aaaatcgatatgtataaacgctttagatcaattactgaattacaagagctagaagagttg
caagaagaaatgattgatcgatttggagaatatccagttgaggttgattatcttttccaa
attgcaaaattgaaggtttttgctattcaagaacgagttgagttaataaagcaagataaa
gaagtcatcacaattctcatagaagaagaagccagcaatttaattgatggtcaaaagcta
tttgacttaagtaataaatatcaacgaattgttggtttaggaatggaaggcagtaaatta
aagctaacagttaatacaaaaggattagctgttgagaaatggcttggcattacgaccgag
cttttaaatggattatctcaagtgaaaaaagaagaaattctccaataa
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