Metabacillus endolithicus: MVE64_21685
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Entry
MVE64_21685 CDS
T09915
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
menl
Metabacillus endolithicus
Pathway
menl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
menl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MVE64_21685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
menl03400
]
MVE64_21685
Enzymes [BR:
menl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MVE64_21685
DNA repair and recombination proteins [BR:
menl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MVE64_21685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
mRNA_cap_enzyme
DUF5006
Motif
Other DBs
NCBI-ProteinID:
UPG62958
LinkDB
All DBs
Position
complement(4278388..4280214)
Genome browser
AA seq
608 aa
AA seq
DB search
MKPMLPTLHADIPTGSDWIYETKYDGFRSILTITNTSIELMSRNEKSLNDNFPEIINEVK
KIHKAFEPFLPITLDGELVYLETPHFSNFELLQIRGRLKNKEKILHEAEKHPCRFLAFDL
LKLKGNSLQSNTFKERKSELKNLFKALKLGTTVDTKTSNLLQYVPCTTDYSTLWKEMKLE
DGEGVIAKQQKGKWEAGVRTKQWLKIKNYKRACFFITGYDKENGYFHVGVYSKNNIIQVG
VFSHGISSQERHALLQIIRENKHSETANFIEIKPAIVVELQFLSLYKDQLREPSFFTFRF
DYHVEDCTWDMLLLKTAPIHQEISITHPDKPLWETVDLKKETFLSYLYQISQYMLPFLQN
RLLTVIRFPHGMFGEAFYQKNCPDYAPDFIQTKKHEDIDYIVCNNLSTLIWLGNQLAFEY
HIPFQTIDTSNPTEIVFDLDPPSKEYFHLAIKASLEMKKIFDKFQLTTFPKLSGNKGLQI
HIPISKNSLTYEETRKFTGFIAEFLVTSFPDDFTIERMKKNRGNRLYVDYIQHAEGKTII
APYSLRGKKEGAYIAAPLYWEEITPQLSVEQFTIEHVLNRVKNSGCPFEKYGESPQDDML
RSLIDQIG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttcctacattacacgcagatattccaactggttcagattggatttac
gaaacgaaatatgatggatttcgctcgatattaactattacaaacacctccattgagtta
atgagtagaaatgaaaaatcactaaatgacaactttccagaaattataaatgaagttaaa
aaaatacataaagctttcgagccatttttaccaattacattggatggagaactcgtttat
cttgaaactccccatttttcaaactttgaattgcttcaaattagaggcaggttaaaaaac
aaggaaaaaatacttcatgaagcagagaaacatccttgtcgatttctagcctttgattta
cttaaattaaaaggtaattcattacaatcaaatactttcaaagaaagaaagtctgagttg
aaaaatctttttaaggcgttaaagctcggtactactgttgatactaaaacttctaatctt
ttacagtatgttccctgtacaaccgattattcaaccctttggaaagagatgaagttagaa
gatggagaaggcgttattgcgaagcagcaaaaagggaaatgggaagcaggcgttcggacg
aagcagtggctaaaaattaagaattataaaagagcctgtttttttattactggttatgat
aaagaaaatggttactttcatgttggggtttattcaaaaaataacattatacaagtagga
gtgttttctcatggaatttccagtcaagaacgccatgcacttctgcaaattatccgagaa
aacaaacattcggaaacagctaattttattgagattaaaccagcaattgtggttgaatta
cagtttttatccctatataaagatcagctaagagaaccgtctttttttacatttcgattt
gattatcatgtggaagattgtacatgggacatgcttttacttaaaactgcacctattcat
caagaaatttcaatcacacatccagacaaacctttatgggaaacggttgacttaaaaaag
gagacatttttaagttatttatatcaaatttctcaatatatgctgccattcttacaaaat
cgactgttaactgtcatccgttttccacatggaatgttcggtgaagccttttatcaaaaa
aattgccctgactatgcacctgactttatacaaacaaaaaaacatgaggatattgattat
attgtttgtaataatttatcaacattaatttggttggggaatcaattagcatttgaatat
catataccatttcaaacaatcgatactagtaacccaactgaaatcgtatttgatctagat
cctccttctaaagaatactttcacttagctattaaagcttcattagaaatgaaaaagatt
tttgacaaatttcagttaacaacctttccaaaattatcaggtaataaaggattacaaatc
catatacctatttccaaaaattctctaacttatgaagaaacaagaaagttcacaggtttt
attgctgaatttttggtaacaagttttcctgatgattttactattgaacggatgaagaaa
aatcgtggaaaccggttgtatgtggattatattcaacacgccgagggtaaaacaattatt
gctccatattctcttcgaggtaaaaaagaaggtgcatatatcgctgcccctctatattgg
gaggaaattactccacaactttctgttgaacaatttacaatagaacatgtattaaacaga
gtgaaaaactcaggctgtccgtttgaaaaatatggagaatctccacaagatgatatgtta
cgctcattaatcgatcaaatcggttga
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