Micromonospora endophytica: Jiend_02020
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Entry
Jiend_02020 CDS
T08807
Symbol
pel_1
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
meno
Micromonospora endophytica
Pathway
meno00040
Pentose and glucuronate interconversions
meno01100
Metabolic pathways
meno02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Jiend_02020 (pel_1)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Jiend_02020 (pel_1)
Enzymes [BR:
meno01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Jiend_02020 (pel_1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
BCJ56780
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Position
204123..205475
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AA seq
450 aa
AA seq
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MRKLAAGAALIMLTLTAAPAPAAAHTPAGGGGLSPLARQLGKQQLPAGDGWAAAGPGTTG
GAAATADQIHVVTSRTELVAALGGNNASNATNATPKIVYVKGTIDGFEGTDGRLLDCTDL
ADPGYSLDAYLAAYDPAVWGRTTPSGPVEQARVRSVANQTRHTQINVGANTTIIGLRGAR
LTGMTLMIDRVSNVIVRNITFDDARDCFPAWSPTDGDTGNWNSQYDQISVRRSENVWVDH
NTFTDGDNPDSAQPSYFGRPYQVHDGSLDITHTASLVTASWNRFDGRDKLMLIGSSNTVG
PDVDRLKVTLHHNLFDGSLQRLPRVRFGQVDIYNNAYRLGGDGYEYAIGVGVQSAVYAEN
NHFTLGAGLSAADLLYDWGGTAITTRGNWVRPAGGPARPVDLVSAYNAVRDPDLSPDAGW
TPALRHGPVLPAPLVPLVVGPLAGADRLPL
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaactcgccgcgggcgcggcattgatcatgctcaccctgaccgctgcacccgcc
ccggcagccgcccacacgccagccggcggaggcggtctgtctccgctggcccggcaactc
ggcaagcagcagctaccggccggcgacggctgggccgccgccgggccgggcaccaccggc
ggcgcggcggccaccgccgaccagatccacgtggtcaccagccgcaccgaactggtcgcc
gcgctcggcgggaacaacgccagcaacgccacgaacgccacccccaagatcgtgtacgtc
aagggcacgatcgacggattcgagggcaccgacggccggctgctcgactgcaccgacctc
gccgatcccggctactcgctggacgcctacctggccgcgtacgatccggcggtctgggga
cggacgacgcccagcggtccggtggagcaggcccgggtccggtcggtggccaaccagacc
cggcacacccagatcaacgtcggcgcgaacaccacgatcatcgggctgcgcggcgcccgg
ctgaccggcatgaccctgatgatcgaccgggtctcgaacgtcatcgtccgcaacatcacc
ttcgacgacgcccgggactgcttcccggcctggtcccccaccgacggcgacaccggcaac
tggaactcccagtacgaccagatctcggtacgccgcagcgagaacgtgtgggtcgaccac
aacaccttcaccgacggtgacaaccccgacagcgcccagccgagctacttcggccgcccc
taccaggtgcacgacggctcgctggacatcacccacaccgccagcctggtcaccgcctcc
tggaaccggttcgacggacgggacaagctgatgctcatcggctcgtccaacaccgtcggc
ccggacgtggaccggctcaaggtcacgctgcaccacaacctgttcgacgggtcgctgcaa
cggctgccccgggtgcgtttcggccaggtcgacatctacaacaacgcctaccggctcggc
ggcgacggctacgagtacgccatcggcgtcggcgtgcagtccgcggtgtacgccgagaac
aaccacttcaccctgggcgccggcctcagcgccgccgatctgctctacgactggggcggt
accgccatcaccacccggggcaactgggtcaggccagcgggtgggcccgcacgtccggtc
gacctggtgagcgcgtacaacgccgtacgcgatcccgacctgtcgcccgacgccgggtgg
accccggcgctgcgccacggcccggtgttgccggccccgctggtgccgctcgtggtcggc
ccgctcgccggcgccgaccgactgccgctgtag
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