Micromonospora endophytica: Jiend_08160
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Entry
Jiend_08160 CDS
T08807
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
meno
Micromonospora endophytica
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meno03019
]
Jiend_08160 (hrpB)
Enzymes [BR:
meno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Jiend_08160 (hrpB)
Messenger RNA biogenesis [BR:
meno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Jiend_08160 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
RoxA-like_Cyt-c
AAA_30
ParA
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
BCJ57394
LinkDB
All DBs
Position
816111..818633
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AA seq
840 aa
AA seq
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MVGDWAVLSDVALDLPVRPVLPGLVAALRAAGSAVLVAPPGTGKTTLAPLAVAGAVDGRV
LVAQPRRVAARAAARRMASLLGERVGDRVGYAVRGERRSGPGTRVEVVTTGLLVRRLHHD
PELAGVGAVLLDEVHERQLDADLALAFTVESRSALRPDLWLVAMSATPQADRFAALLGGA
TPAPILRASAALHPVTRVWTPPPRPVPPPGAGPVDRVLLDHVAATVRRALRERAGDLMVF
LPGVGEIAAVAGRLADLRDNVDVLRLHGRQDGGEQDAALRPGPRRRVVLATAVAESSLTV
PGVRTVVDAGLSRVARLDLARGLGALVTVPASRAAATQRAGRAGREAPGHVYRCWAEASH
ERLPAQPEPEIATADLTGFALELAAWGAPDGTGLALPDPPPPAAMAVARQTLRTLDALDP
DGRITSRGRTIVATGAHPRLARALLDGAQRVGADRAAEVVALLAEESVARPGDDVAAVWR
RLRAGTDPAATARWRTEVRRLRSALPTRGDGSAALPDDLAAGLLVGLAYPERLARVRRSG
GTAYLMSGGTAAELAPGSALAGADWLAVAVADRSPGAPTARIRLAAALDEGTAREAGAPL
SRTDREVAWSGTDVVAREVVRLGAIELVERPLSRPDPEQVAAALLTGLRSVGLDLLTWTP
ATRALRERLAFCRQVLGDAWPDVSDQALLAGAADWLGPELAAARRRADLARIDVAGALRR
LVPWPLAGRLDELAPERITVPSGSRIRVDYTDPGAPVLAVRLQETFGWADAPQVAGGRVP
VLLHLLSPAGRPVAVTADLASFWRTGYRQVRAELRGRYPRHPWPDDPTTAPPTRAGGRRR
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
gtggtgggagactgggctgtgctttccgacgtggccctcgacctgcccgtccggccggtg
ttgccgggcctggtggcggcgctgcgtgccgccgggagcgccgttctcgtcgcaccgccg
ggcaccggcaagaccacgctcgcgccgctcgccgtggccggcgcggtcgacgggcgggtg
ctggtcgcccagccgcgccgggtggccgcccgcgcggcggcccggcggatggcgtcgttg
ctcggtgagcgggtcggcgaccgggtcgggtacgcggtgcgcggtgagcgccgcagcggt
ccgggtacccgggtcgaggtggtcaccaccgggttgctggtgcgccggctgcaccacgat
cccgaactggcaggcgtcggcgcggtgctgctcgacgaggtccacgagcgacaactcgac
gccgacctcgcgctcgccttcaccgtggagtcccggtccgcgctgcgacccgacctctgg
ctggtggcgatgtccgcgaccccgcaggccgaccgcttcgccgcgctgctcggcggcgcc
acacccgcgccgatcctgcgtgcctcggcggccctgcacccggtgacccgggtctggacg
ccgccgccccgaccggtgccgccacccggggcgggcccggtggaccgggtcctgctcgac
cacgtcgccgccacggtccggcgggcgctgcgcgagcgtgccggcgatctgatggtcttc
ctgcccggagtcggcgagatcgccgccgtcgccggccggctggccgacctgcgcgacaac
gtcgacgtgctgcggctgcacggccgtcaggacggcggtgagcaggatgccgccctgcgg
ccggggccgcgccgtcgggtggtgctggccacggcggtggcggagagcagcctgaccgtg
ccgggggtacgcacggtggtggacgccggcctgtcccgggtggcccgactggacctcgcc
cggggactgggcgcgctggtcaccgtgccggcgtcccgggccgccgccacccagcgggcc
ggccgggccggccgggaggcacccggccacgtctaccgctgctgggccgaggccagccac
gaacggctgcccgcccagccggagccggagatcgccaccgccgacctcaccgggttcgcc
ctggaactggccgcctggggtgcgccagacggcaccgggctcgccctgcccgacccgccc
ccaccggcggcgatggcggtggcccggcagaccttacgcaccctcgacgccctcgacccg
gacggccggatcaccagccggggcaggacgatcgtcgccaccggagcgcatccccggctg
gcccgtgccctgctcgacggggcgcagcgggtgggggcggaccgggccgccgaggtggtg
gcgctgctcgcggaggagtccgtcgcccggcccggcgacgacgtcgccgccgtctggcgc
cggctgcgcgccggcaccgaccccgccgcgaccgcccgctggcggaccgaggtacgccgg
ctgcgcagcgccctacccacccgtggcgacggatctgcggcgctgcccgacgatctcgcc
gcggggctgctggtcgggttggcgtacccggagcggctggcccgggtgcggcgatcgggc
ggcacggcgtacctgatgagcggtgggaccgccgcggagttggcgccggggtcggcgctg
gccggtgccgactggctcgccgtggccgtggcggaccgctcccccggcgcgccgaccgcc
cggatccggctcgccgccgcgctcgacgagggcaccgcccgcgaggccggcgcgccgttg
tcgcgtaccgatcgggaggtcgcctggtccgggaccgacgtggtggcccgggaggtggtc
cggctgggcgcgatcgagctggtcgaacgtccactgtcccggcccgacccggagcaggtc
gccgcagccctgctgaccggcctgcgcagcgtcgggctcgacctgctgacctggaccccg
gcgacgcgggcgctgcgggaacggctggcgttctgccggcaggtgctcggcgacgcctgg
ccggacgtctccgaccaggcgctgttggccggcgcggccgactggctcggcccggagctg
gccgccgcgcgtcgccgcgcggacctggcccgcatcgacgtggcaggcgcgttgcgccgg
ttggtgccgtggccgctggcgggacggctggacgagctggccccggaacggatcaccgtg
cccagcggctcccggatccgggtggactacaccgatcccggcgcgccggtgctcgcggtc
cggctccaggagacgttcggctgggcggacgcgccgcaggtggccggcggacgggtgccg
gtgctgctgcacctgctctccccggcggggcggccggtggcggtcaccgccgacctggcg
tcgttctggcgcaccggttaccgccaggtccgggccgagctgcggggccggtacccccgc
catccgtggccggacgaccccaccacggcgccgccgacccgggcgggtgggcggcggcgc
tga
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