Micromonospora endophytica: Jiend_12270
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Entry
Jiend_12270 CDS
T08807
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
meno
Micromonospora endophytica
Pathway
meno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Jiend_12270 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meno03019
]
Jiend_12270 (rny)
Messenger RNA biogenesis [BR:
meno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Jiend_12270 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
FUT8_N_cat
DUF6479
Motif
Other DBs
NCBI-ProteinID:
BCJ57805
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Position
complement(1258015..1259781)
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AA seq
588 aa
AA seq
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MSGVEIVLLAAVLVLTLLVLGAVVFGMRMLRGLQARPAPEDPAYIAEKDRQEQSLAALRT
AADEVNSTIDVAKSAAAAARTEAAAAKAEAKAARAEARRVLDDARAEADTVLERAHKQAE
VDAEQLRTAARRSGEREVAVLAATTREQAAEVERRAARMDERERLHTEEVERLAERERQL
TAASAALAAREAALVLREEELAEAENQRRRELERVAGLTADAARTELVEAIETQAKREAA
LLVRDIESDARSTAEQRARHIVVDAIQRVASEQTAESVVSVLHLPGDEMKGRIIGREGRN
IRAFESVTGVNLIIDDTPEAVLLSCFDPVRREVGRLTLEKLVLDGRIHPHRIEEVHELAR
QEVDQLCHRAAEDALVAVGITEIHDELVTLLGRLRYRTSYGQNVLKHLVETAHIAGVMAA
ELRLDVPLIKRSAFLHDIGKALTHEVEGSHAIVGADVARKYGESEDVVHAIEAHHNEVPP
QTVEAVLTQASDACSGGRPGARRESLEAYVKRLERIEEIAAGKLGVEKVFAMQAGREIRV
MVKPDDVDDIGAAVLARDVAKQIEEELTYPGQIRVTVVRESRVTEIAR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgtcgagatcgtgctgctggccgccgtgctggtgctgaccctgctggtgctg
ggcgctgtggtgttcgggatgcggatgttgcgcgggctccaggcgcggccggcaccggag
gatcccgcctacatcgccgagaaagaccggcaggagcagtccctggccgcgttgcgtacc
gccgccgacgaggtgaacagcaccatcgacgtggcgaagtccgccgcggcggcggcccgc
accgaggcggcggcggccaaggcggaggcgaaggcggcccgggcagaggcacgtcgcgtg
ctcgacgacgcccgcgccgaggcggacacggtgctggagcgagcacacaagcaggccgag
gtggacgccgagcagttgcggaccgcggcccggcgcagcggcgaacgggaggtggcggtg
ctcgccgcgaccacccgggaacaggctgccgaggtggagcggcgggcggcccggatggac
gagcgggagcggctgcacaccgaggaggtggagcggctcgccgagcgggagcgccagctg
accgcggcgagcgccgccctcgccgcgcgggaggccgcgctggtgcttcgcgaggaggaa
ctggcggaggcggagaatcagcgacggcgcgagttggagcgggtcgcggggctcaccgcc
gatgccgcccgcacggagctggtggaggcgatcgagacccaggcgaagcgggaagcggcg
ttgctggtgcgggacatcgagtccgacgcccggtcaacggccgagcagcgggcccggcac
atcgtggtggacgcgatccagcgggtggcgagcgagcagaccgcggagagcgtggtcagc
gtgctccatctgccgggcgacgagatgaaggggcggatcatcggccgggagggccgcaac
atccgggccttcgagtcggtcaccggggtcaacctgatcattgatgacacgcccgaggcg
gtgctgctgtcctgcttcgatccggtacgccgcgaggtgggtcggttgacgctggagaaa
ctggtgctggacgggcggatccatccgcaccggatcgaggaggtgcacgagctggcccgc
caggaagtggaccagctgtgccaccgggcagccgaggacgcgctggtggcggtgggcatc
accgagatccacgacgagttggtcacgctgctgggtcggctgcgctaccgcacgtcgtac
gggcagaacgtgctcaagcatctggtggagaccgcgcacatcgccggtgtgatggcggcc
gagttgcgcctggacgtgccgttgatcaaacggtcggcgttcctgcacgacatcggcaag
gcgctcacccacgaggtggagggcagccacgccatcgtcggcgcggatgtggcccgcaag
tacggcgagagtgaggacgtggtccacgccatcgaggcacaccacaacgaggtgccgccg
cagaccgtcgaggcagtgctcacccaggcttccgacgcctgctccggtggtcggccgggg
gcccggcgggagagcctggaggcgtacgtcaagcggctggagcggatcgaggagatcgcg
gccggcaagctcggtgtggagaaggtcttcgccatgcaggcgggccgggagatccgggtg
atggtcaagcccgacgacgtcgacgacatcggcgcggcggtgctggcccgggacgtggcc
aagcagatcgaggaggagctgacctatccgggccagatccgagtgacagtggtccgcgag
tcccgcgtcaccgaaatcgcccgttga
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