Micromonospora endophytica: Jiend_19690
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Entry
Jiend_19690 CDS
T08807
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meno
Micromonospora endophytica
Pathway
meno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Jiend_19690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meno03400
]
Jiend_19690 (mfd)
Enzymes [BR:
meno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Jiend_19690 (mfd)
DNA repair and recombination proteins [BR:
meno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Jiend_19690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
BCJ58547
LinkDB
All DBs
Position
complement(2052532..2055642)
Genome browser
AA seq
1036 aa
AA seq
DB search
MLAVTATSREAEDLVAALGSLLPAEQVAIFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDSADAHGRTGPLRVVVAPVRSVLQPQLKGLGDLEPVRLAAGEEADLEQVARRLTDMAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEQVAQLWA
PPCRELLLTPAVRERAATLAGQHPELAEILDKLAGGVPVEGMESLAPALIGSDSMELLLD
CMPKGTYVLLCDPERIRTRAHDLVRTSDEFLQASWAAAAVGGQAPVDLGAAAFRTLADVR
ARAATLRQPWWTLSPFGLAEPESRPRQPWEDEPEAVDVTPDDAIAVSLAAQPAPLYHGET
ARVIDDLKRWTSEGLSIALVFEGHGPAQRAVEVLRDGGLGARLTEQVPAAPAPGELLVTC
GSLTGGFVAEAARFVLLTGNDVTGGRGSSTRDMRKMPSRRRNTIDPLELRAGDHVVHEQH
GIGRYVELVQRTVNGASREYLVIEYAASKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLHK
MGGSDWQKSKARARKAVKEIAAQLIQLYAARKASKGHNFGPDTPWQRELEDAFPWQETPD
QLAAIEEVKRDMEQSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQ
HYNTFAERMSQFPITIRQLSRFQTPKEAEQTLEMVANGTADIVIGTHRLLAAATRFKSLG
LVIVDEEQRFGVEHKEHLKSMRAAVDVLSMSATPIPRTLEMAITGIREMSTIATPPEERH
PVLTAVGAYDERQVAAAIHRELLRDGQVFYLHNRVESIERTARRLRELVPEARVAVAHGQ
LGEDALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRVG
RGRERAYAYFLYPSDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQS
GHIEGSASTCTSGWSARRCRRSRASGLKRRPTSRSTCRWTRTCRTTTSAWSGCAWRCTAS
SPRHATRSGCARWPPR
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
gtgctggcggtgaccgccaccagccgggaggccgaggatctcgtggccgcgctgggcagc
ctgctgccggccgagcaggtggcgatcttccccagctgggagacgttgccgcacgagcgg
ctctcgccgcgctccgacacggtcggtcggcgactggccgtgctgcgccggttggcgcat
ccggactcggccgacgcgcacggccgtaccgggccgctgcgggtggtggtcgcgccggtc
cggtcggtgctgcagccgcagctcaaggggctcggcgacctggagccggtgcggttggcc
gccggcgaggaggcggacctggagcaggtcgcccgccggctcaccgacatggcgtacgcg
cgtgtcgacctggtcaccaagcggggcgagttcgccgtacgcggcggcatcctcgacgtc
ttcccacccaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggag
atccgcaccttcgccgtcgccgaccagcgcaccatcgagcaggtcgcgcagctctgggca
ccgccctgccgggagctgctgctcaccccggccgtgcgggagcgggccgccacgttggcc
gggcagcacccggagctggccgagatcctggacaagctggccggtggcgtaccggtcgag
gggatggagtcgctggctccggcactcatcggcagcgactcgatggagctgctgctggac
tgcatgcccaagggcacctacgtgctgctctgcgacccggagcggatccgcacccgggcg
cacgacctggtgcgtacctcagacgagtttctccaggccagctgggccgcggccgccgtc
ggtggccaggccccggtcgacctgggcgccgccgccttccgcaccctggccgacgtacgc
gcgcgcgccgccacgctgcgccagccctggtggacgctgtcgccgttcggcctggccgaa
cccgagagcaggccacggcagccgtgggaggacgagccggaggcggtcgacgtcaccccc
gacgacgcgatcgcggtgagtctggccgctcagcccgcgccgctctatcacggcgagacc
gcccgagtgatcgacgacctcaagcgctggaccagtgagggcctgtcgatcgcgctggtc
ttcgaggggcacggtcccgcccagcgggcggtcgaggtgctccgcgacggcggcctcggc
gcgcggctgaccgagcaggtgccggccgcacccgccccgggtgagctgctcgtcacctgc
ggcagcctgaccggcggcttcgtggccgaggcggcccggttcgtgctgctcaccggcaac
gatgtcaccggtggccggggcagctcgacccgggacatgcgcaagatgccgagccggcgg
cgcaacaccatcgacccgctggagttgcgcgccggcgaccacgtggtgcacgagcagcac
ggcatcggccggtacgtggagctggtgcagcggacggtcaacggcgcgtcgcgcgaatac
ctggtcatcgagtacgccgcgagcaagcgcggccagcccggcgaccggctcttcgtcccc
accgaccagctcgaccagctcagccgctacgtcggcggtgagcagcccaccctgcacaag
atgggcggctcggactggcagaagtccaaggcgcgggcgcgtaaggcggtcaaggagatc
gctgcccagctgatccagctctacgccgcccgcaaggcgtccaaggggcacaacttcggg
ccggacaccccgtggcagcgggagctggaggacgccttcccctggcaggagacgccggac
cagctcgccgccatcgaagaggtcaagcgggacatggagcagagcgtcccgatggaccgg
ctgatctgcggcgacgtgggctacggcaagaccgagatcgcggtacgcgcggcgttcaag
gcggtgcaggacggcaagcaggtcgccgtgctggtgccgaccacgttgctggtgcaacag
cactacaacaccttcgccgagcggatgagccagttcccgatcacgatccgccagctctcc
cggttccagacgcccaaggaggccgagcagaccctggagatggtggccaacggcaccgcc
gacatcgtcatcggcacccaccggctgctggcggcggccacccggttcaagtcgctggga
ctggtcatcgtcgacgaggagcagcgtttcggcgtggagcacaaggaacacctgaagtcg
atgcgggccgcggtggacgtgctgagcatgtcggccaccccgatcccgcgcaccctggag
atggcgatcaccggcatccgggagatgtccaccatcgccaccccgcccgaggagcggcac
ccggtgctcaccgccgtcggggcgtacgacgagcggcaggtggccgccgcgatccaccgt
gagctgctccgcgacggccaggtcttctacctgcacaaccgggtcgagtcgatcgagcgg
accgcgcggcggctgcgtgagctggtgcccgaggcccgggtcgcggtggcgcacggccag
ctgggtgaggacgccctggagaaggtgatggtcggcttctgggagaaggagttcgacgtc
ctggtctgcaccacgatcgtggagtccggcatcgacatcccgaacgccaacacgctgatc
gtggagcgggccgacctgctcggcctggcccagctgcaccagatccggggccgggtgggt
cgcggccgggagcgggcgtacgcgtacttcctctatccgtcggacaagccgctcaccgag
cacgcccacgagcggctggctaccatcgcccagcacaccgagctgggtgccggcatgtac
gtggcgatgaaggacctggagatccggggtgccggcaatctgctcggcggcgagcagtcc
ggccacatcgaggggtcggcttcgacctgtacgtccggatggtcggcgaggcggtgtcgg
cgttcaagggcgagcggcctgaagaggagaccgacgtcaagatcgacttgccggtggacg
cgcacctgccgcacgactacatcggcgtggagcggctgcgcctggagatgtaccgcaagc
tcgccgaggcacgcgacgaggagcggctgcgcgaggtggccgccgagatga
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