Micromonospora endophytica: Jiend_23380
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Entry
Jiend_23380 CDS
T08807
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
meno
Micromonospora endophytica
Pathway
meno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Jiend_23380
09124 Replication and repair
03420 Nucleotide excision repair
Jiend_23380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meno03021
]
Jiend_23380
03400 DNA repair and recombination proteins [BR:
meno03400
]
Jiend_23380
Enzymes [BR:
meno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Jiend_23380
Transcription machinery [BR:
meno03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Jiend_23380
DNA repair and recombination proteins [BR:
meno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Jiend_23380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
BCJ58916
LinkDB
All DBs
Position
2404413..2406092
Genome browser
AA seq
559 aa
AA seq
DB search
MSGGPLIVQSDKTLLLEIDHPDAQACRMAIAPFAELERSPEHVHTYRLTPLGLWNARAAG
HDAEGVVDTLIKYSRYPVPHALLVDVAETMDRYGRLQLANDPAHGLVLRALDRVVLVEVA
KSKKLAGMLGAKLDDDTIAVHPSERGRLKQALLKLGWPAEDLAGYVDGEAHPIELAEAGK
DGRKPWTLRSYQREAVEAFWAGGSGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAG
RQWKRELIARTSLTEEEIGEYSGERKEIRPVTIATYQVLTSRRGGAFTHLDLFGARDWGL
VVYDEVHLLPAPIFRFTADLQARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIES
QGWIAPAQCTEVRVTLTDAERMSYATAEAEERYRMAATARTKLPVIKALVDRHPDEQTLV
IGAYIDQLHQLGEYLDAPIVEGSTTNKERERLFDAFRSGEIRTLVISKVGNFSIDLPEAA
VAIQVSGTFGSRQEEAQRLGRVLRPKADGRQAHFYTVVSRDTIDTEYAAHRQRFLAEQGY
AYTIIDADDVLGPPLPTVD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggtggacccctgatcgtgcagtcggacaagacgctgttgttggagatcgatcac
ccggacgcgcaggcctgccggatggcgatcgcgcccttcgccgagttggaacgctccccc
gaacacgtgcacacgtaccggctgactccgctcgggctgtggaacgcccgcgccgcaggt
cacgacgccgagggcgtggtggacacgctgatcaaatactcccgttacccggtgccgcac
gccctgctcgtcgacgtggccgagaccatggaccgctacggccggctccaactcgccaac
gacccggcccacggcctggtcctgcgcgccctggaccgggtggtgctggtcgaggtggcc
aagagcaagaaactggccgggatgctcggcgcgaaactcgacgacgacaccatcgcggtg
cacccgtccgagcggggtcggctcaagcaggccctgctgaagctgggctggccggcggag
gacctggccgggtacgtcgacggtgaggcgcacccgatcgagctggccgaggcgggtaag
gacggtcgcaagccgtggacgctgcggtcgtaccagcgggaagccgtggaggcgttctgg
gccggcggctcgggcgtggtggtgctgccctgcggcgccggcaagacgctggtcggcgcg
gcggcgatggccgaggcgaaggcgaccacgctgatcctggtgacgaacacggtcgccggt
cgacagtggaagcgggaactgatcgcccgcacctcgctcaccgaggaggagatcggcgaa
tactccggcgagcgcaaggagatccggccggtcaccatcgccacgtaccaggtgctcacc
tcgcggcgcggcggcgccttcacccacctggacctgttcggggcccgcgactggggcctg
gtcgtctacgacgaggtgcacctgctgcccgcgccgatcttccgcttcaccgcggacctc
caggcccgccgccggctgggcctgaccgccaccctggtccgcgaggacggccgggagggc
gacgtgttcagcctgatcggcccgaagcggtacgacgcgccctggaaggacatcgagtcg
cagggctggatcgccccagcccagtgcaccgaggtccgggtcaccctcaccgacgccgaa
cgaatgtcgtacgccaccgccgaggccgaggagcggtaccggatggcggcgaccgcccgc
accaagctgccggtgatcaaggcgctggtcgatcggcacccggacgagcagacgctggtc
atcggcgcgtacatcgaccagttgcaccagctcggagaatatctggacgccccgatcgtg
gaaggctccaccaccaacaaggagcgcgagcgcctcttcgacgcgttccgctccggcgag
atccgcaccctggtgatttcgaaagtcggaaacttctccatcgacctgcccgaggcggcg
gtggcgatccaggtctccggcaccttcggctcccgccaggaggaggcgcagcgcctgggc
cgggtgctccgccccaaggccgacggccgccaagcccacttctacaccgtcgtctcccgc
gacaccatcgacaccgagtacgccgcccaccgccaacgcttcctcgccgaacagggctac
gcgtacaccatcatcgacgccgacgacgtcctcggcccacccctccccaccgtcgactga
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