Micromonospora endophytica: Jiend_23970
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Entry
Jiend_23970 CDS
T08807
Symbol
topA_2
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
meno
Micromonospora endophytica
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meno03032
]
Jiend_23970 (topA_2)
03400 DNA repair and recombination proteins [BR:
meno03400
]
Jiend_23970 (topA_2)
Enzymes [BR:
meno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Jiend_23970 (topA_2)
DNA replication proteins [BR:
meno03032
]
Prokaryotic type
DNA Topoisomerases
Jiend_23970 (topA_2)
DNA repair and recombination proteins [BR:
meno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Jiend_23970 (topA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
MarR_2
HC2
Toprim_2
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
BCJ58975
LinkDB
All DBs
Position
complement(2466412..2469219)
Genome browser
AA seq
935 aa
AA seq
DB search
MRPEAGVATATSRKEVETDVPSNAGTTRLVIVESPAKAKTISGYLGPGYVVEASFGHVRD
LPRNAADVPAKYKGESWARLGVDVDNGFHALYVVSADRKQQISKLTKLAKEVDEILLATD
EDREGEAIAWHLVETLKPKVPVRRMVFHEITKPAIQAAVANPREIDRDLVDAQEARRILD
RLYGYEVSPVLWKKVMPKLSAGRVQSVATRIVVERERQRMAFRTAEYWDILATLAVTNAG
EGPRTFNATLVALNGDRIATGKDFEPTTGRVRAGAGVVHLDEGGARGLAARLDGRPFTVT
RVEEKPYRRRPYAPFITSTLQQEAARKLRFSSQQTMRTAQRLYENGYITYMRTDSVNLSE
TAIAAARRQIVELYGERSVPPEPRRYTGKVKNAQEAHEAIRPAGDNFRTPGDVAKELSGE
EFKLYELIWRRTIASQMTDAVGSSVSVRIRAVSSAQEEADFGATGKTITDPGFLRAYVES
SDDENAEAEDAERRLPNLVKDQPLTADELAAQGHHTQPPSRYTEASLVKALEELGIGRPS
TYASIMQTIQDRGYVVKRGQAMIPSFLAFAVIGLMERHYPRLIDYDFTASMENELDEIAG
GDHAAVDFLTAFYFGTTNGVGDQDIARSGGLKKLVTENLSDIDARSVNSIPLFTDDEGRE
VVVRVGRYGPYLQRAVPGEQPAPAGEGEEGGGQGDRAPIPEGLAPDELTPEKVHELFLGG
GGERKLGDDPATGEPILLKSGRYGPYVASGERKSSLLRTQSPDSLTLDEALKLLSLPRLV
GVGPDGAEVIANNGRYGPYVKRGDEFRSLDAEEKMFTVTLDEALALLAAPKTRQRRAAAP
PLREMGADPLTEKPLVIKDGRFGPYVTDGETNASLRRGQTPEALTLEEASEMLAEKRAKG
PAPKKAAKKAPAKKTPAKKTTATKTTAKKAPAKKT
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcccggaggcgggcgtggccacggccacgagcaggaaagaggtcgaaacagacgtg
ccgagcaacgctggaaccacccgcctggtcatcgtcgagtctccggcgaaggccaagacg
atctcgggctacctcggcccggggtacgtcgtggaggccagcttcgggcacgtccgcgac
ctgccccgcaacgccgccgacgtgccggcgaagtacaagggtgagtcctgggcccggctc
ggggtcgacgtcgacaacggcttccacgccctctacgtcgtctccgccgaccgcaagcag
cagatcagcaagctgaccaagctggccaaggaggtcgacgagatcctcctcgccacggat
gaggaccgcgagggcgaggcgatcgcctggcacctggtggagaccctcaaaccgaaggtg
ccggtccggcggatggtcttccacgagatcaccaagccggccatccaggcggcggtggcc
aacccccgcgagatcgaccgggacctggtcgacgcccaggaggcgcggcgcatcctggac
cggctctacggctacgaggtctccccggtgctgtggaagaaggtcatgccgaagctctcg
gcgggccgggtgcagtccgtggcgacccggatcgtggtcgagcgggaacggcagcggatg
gccttccgcaccgccgagtactgggacatcctggccacgctcgccgtgacgaacgccggt
gagggcccgcgcaccttcaacgccacacttgtcgccctcaacggcgaccggatcgccacc
ggcaaggacttcgaaccgaccacgggtcgggttcgcgccggtgcgggagtcgtgcacctc
gacgagggcggtgcccgggggctggcggcccggctcgacgggcggcccttcaccgtcacc
cgggtcgaggagaagccctaccgccgccgcccgtacgcgcccttcatcacctcgaccctc
cagcaggaggcggcccgcaagctgcggttctcgtcgcagcagacgatgcgtaccgcgcag
cggctctacgagaacggctacatcacctacatgcgtaccgactcggtgaacctgtcggag
accgccatcgcggcggcccgccggcagatcgtcgagctgtacggcgagcgcagcgtgccg
ccggagccgcgccgctacaccggcaaggtgaagaacgcccaggaggcgcacgaggcgatc
cgcccggcgggcgacaacttccgcacccccggcgacgtggccaaggagctgtccggcgag
gagttcaagctctacgagctgatctggcggcgcaccatcgcctcgcagatgaccgacgcg
gtcggctccagcgtctcggtgcggatccgggcggtttcctccgcacaggaggaggccgac
ttcggcgccaccggcaagaccatcaccgaccctggcttcctgcgcgcgtacgtcgagtcc
agcgacgacgagaacgccgaggccgaggacgccgagcggcggctgcccaacctggtcaag
gaccagccgctgaccgccgacgagctggccgcccagggccaccacacccagccgccgtcg
cgctacaccgaggcgtcgctggtcaaggcgctggaggagctgggcatcggccgcccctcc
acgtacgcctcgatcatgcagaccatccaggaccgtggatacgtcgtcaagcgcggccag
gcgatgatcccgtcgttcctggcgttcgcggtgatcgggctgatggagcggcactacccg
cgcctgatcgactacgacttcaccgccagcatggaaaacgagctggacgagatcgccggc
ggcgaccacgcggcggtggacttcctcaccgcgttctacttcggcaccacgaacggtgtc
ggtgaccaggacatcgcccgttccggcgggttgaagaagctggtcaccgagaacctcagc
gacatcgacgcgcgcagcgtcaactcgatcccgctcttcaccgacgacgaggggcgtgag
gtggtggtgcgggtcggccgttacgggccgtacctgcaacgggctgtgcccggcgagcag
cccgcaccggccggtgagggcgaggagggcggcggccagggtgaccgggcaccgatcccg
gagggcctggcgccggacgagttgaccccggagaaggtgcacgagctgttcctcggcggc
ggcggcgaacgcaagctcggcgacgacccggcgaccggggagccgatcctgctcaagtcc
ggccggtacggcccgtacgtggcaagtggcgagcgcaagtcctcgctgctgcgcacccag
tcaccggactcgctcaccctcgacgaggcgctcaagctgctcagcctgccccgcctggtc
ggggtcggcccggacggtgccgaggtgatcgccaacaacggccgctacggcccgtacgtc
aagcgtggtgacgagttccgctcgctggacgcggaagagaaaatgttcaccgtcacgctg
gacgaggcactggccctgctggccgccccgaagacccgccagcgccgggccgcggctccg
ccgctgcgggagatgggcgccgacccgctcaccgagaagccgctcgtcatcaaggatggc
cggttcggcccgtacgtcaccgacggcgagacgaacgcctccctgcggcgcggccagacc
cccgaggcgctgaccttggaggaggcatccgagatgctcgccgagaagcgcgccaagggc
cccgcccccaagaaggccgccaagaaggccccggcgaagaaaacccccgccaagaagacc
accgccaccaaaaccaccgccaagaaggcccccgcgaagaagacctga
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