Micromonospora endophytica: Jiend_35740
Help
Entry
Jiend_35740 CDS
T08807
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
meno
Micromonospora endophytica
Pathway
meno03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Jiend_35740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meno03021
]
Jiend_35740 (rpoC)
03400 DNA repair and recombination proteins [BR:
meno03400
]
Jiend_35740 (rpoC)
Enzymes [BR:
meno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Jiend_35740 (rpoC)
Transcription machinery [BR:
meno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Jiend_35740 (rpoC)
DNA repair and recombination proteins [BR:
meno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Jiend_35740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCJ60152
LinkDB
All DBs
Position
3658797..3662684
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAESRHRDLSTIENEILAEKRQSENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALVQNMDLEAEAESLRETIRTGKGQRKIRALKRLKVVA
AFQNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTAGERGEGR
AFSSDAEARMAYDNGELHLQAPVKIRLRDVVEVDNGAGGQPWTAPEGWVPGEPLTVETTL
GRVLFNETLPQGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKREILERYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQIGQQLDGR
LVVHEHAETSVHARTLADDIKGPDGTVVAHRGQDINSIGVDKIVAAGVETVRVRSVLTCE
SKLGVCGACYGRSLPTGKIVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARIPKGKAPIADTPGRIRIEDGERSRKIVVIPDDGSDEIVYDKISKRVRLRA
HDGDHVDVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgagttgcgaattgggctggcgaccgccgacgacatc
cgtcagtggtcgcacggcgaggtcaagaagcccgagacgatcaactaccgcactctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgcagcgtgactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctcgaaggttcgccgtgagcggatgggccacatcgagctcgccgccccg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggctacctgctggacctc
gcccccaaggacctcgaaaagatcatctacttcgcctcgtacgtcgtgacgagcgtggac
gccgagtcgcgtcaccgtgacctctcgacgatcgagaacgagatcctcgccgagaagcgg
cagtcggagaacagccgcgactcggagatcgagaagcgggccgccaagctcgaggccgac
ctggccgagctggaggccgagggcgcgaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgcctggac
gaggtgcttgacaccttccgcaagctggagccgaagcagctggtcaccgacgagctgctc
taccgcgagctgcgggaccggttcggcgagtacttcaccggtggcatgggcgccgaggcg
atcaaggccctggtgcagaacatggacctcgaagccgaggcggagagcctgcgggagacc
atccgtaccggcaagggccagcggaagatccgggcgctcaagcggctgaaggtcgtggcg
gcgttccagaacacccgcaactcgccgctcggcatggtgctggactgcgtaccggtgatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgccaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgtggccggccggtcaccggtccgggtaaccgtccgctgaag
tcgctctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgg
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggtgctgctcaaccgg
gcgcccaccctgcaccgactgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtgcacgtgccgctctccgccgaggcacaggccgaggcgcggatcctgatgctg
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcggcctctaccacctcacccacctcaccgccggtgagcgcggggagggccgg
gcgttcagctcggacgccgaggcgcggatggcgtacgacaacggcgagctgcacctccag
gcaccggtcaagatccgactgcgcgacgtggtcgaggtcgacaacggtgccggcggccag
ccgtggaccgcgcccgagggctgggttccgggtgagccgctgaccgtggagaccaccctc
ggccgggtgctgttcaacgagacgctgccgcagggctaccggttcgtgaactacgagatc
cgcaagggtcagctctccgcgatcgtcaacgacctcgccgagcggttcccgaaggtggcg
ctcgccgccaccctggacgggctcaaggaggccggtttccactgggccacctggtccggt
gtgaccatcggcatggaggacgtcatcgctccgccgcgcaagcgggagatcctggagcgg
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gagcgtcgcggcgaactcatcgagatctggaccaaggcgacgaacgaggtcgccaaggag
atggacaccgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgcccgc
ggtaacctgctccagctccggcagatcgcggcgatccgtggtctggtggccaacccgaag
ggcgagatcatcccgcggccgatcaaggccagctaccgggagggtctgtccgtgctggag
tacttcatctccacgcacggtgcccgtaagggtctcgcggacaccgccctgcgtaccgcc
gactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtcatcatccgcgag
gaggactgcggtaccgaccgggccatcccgatgcagatcggtcagcagctcgacggtcgg
ctggtggtgcacgagcacgccgagaccagcgtgcacgcacgtacgctcgccgacgacatc
aaggggccggacggcaccgtggtggcccaccgggggcaggacatcaactccatcggagtc
gacaagatcgtcgccgccggggtcgagacggtccgggtgcgcagcgtgctcacctgcgag
tcgaagctgggcgtctgcggtgcgtgctacggccgttcgctgccgaccggcaagatcgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggtacccag
ctgacgatgcgtaccttccacaccggtggcgtcgcgggtgaggacatcacccagggtctg
ccgcgtgtccaggaaatcttcgaggcccggatcccgaagggcaaggcgccgatcgccgac
acccccggccggatccggatcgaggacggcgagcggtcgcgcaagatcgtcgtgatcccg
gacgacggcagcgacgagatcgtgtacgacaagatctcgaagcgggtccggctccgggcg
cacgacggcgaccacgtcgacgtcggtgagaagctcaccgagggcaccatcgacccgcac
gagctgctgcgcatcctcggcccgcgtgcggtccaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccgggtgtg
ctcgtcgaccgggcgctgttcgagtcggagaaccgccggctcgtcggcgagggtggcgag
cccgccgccggtcgtccggtgctgatgggtatcaccaaggcgtcgctggccaccgactcc
tggctctcggcggcctccttccaggagaccacccgggtgctgaccgacgcggcgatccac
gcccgtagtgactcgctcatcggtctcaaggagaacgtgatcatcggtaagctcatcccg
gccggtaccggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgaccggctacccggagaccgactacggcttcgggccggccagc
ggccaggcggtgccgctggacgacttcgacttcgggtcgtaccgctga
DBGET
integrated database retrieval system
