Micromonospora endophytica: Jiend_37490
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Entry
Jiend_37490 CDS
T08807
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
meno
Micromonospora endophytica
Pathway
meno03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Jiend_37490 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
meno03000
]
Jiend_37490 (alkA)
03400 DNA repair and recombination proteins [BR:
meno03400
]
Jiend_37490 (alkA)
Enzymes [BR:
meno01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Jiend_37490 (alkA)
Transcription factors [BR:
meno03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Jiend_37490 (alkA)
DNA repair and recombination proteins [BR:
meno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Jiend_37490 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
BCJ60327
LinkDB
All DBs
Position
complement(3833675..3835183)
Genome browser
AA seq
502 aa
AA seq
DB search
MDFERCYRAVDSRDQRFDGWFYTGVTSTGIYCRPSCPAMTPKRQNVRFFPSAAAAQGAGL
RACRRCRPDASPGSPEWDVRADVVGRAMRLIADGVVDRDGVPGLAAKLGYTERHLHRLLR
AELGAGPLALARAQRAQTARTLIETTELGLAEIAFAAGFGSVRQFNDTLREVYGVAPSQL
RAGRRGTIGGAGTVSLRLAYRPPLHAAALLDFLARRTLPGVDEVRDGTYHRGLRLPHGTG
EAALTPADGYVAATLRLTDLRDLAPAVARCRHLFDLDADPVAIDQTLAADPVLAPPVAAE
PGIRVPHAPDGFEIAVRAITTQQVSLASARTTLTHLLPHPLPHPLPTPCPTSPPRPAELI
KRFWSRRALRRDANFLVNSPGFLVRGRCWGWGMGVSDGWAAAGGDSGVARAVVEGELELA
PGGDREETVRRLLAIPGIGPWTAGYVAMRALGDPDVFLPTDLAVRRGAAALGLPDDPKTL
DAYAARWRPWRSYAVIRLWRAA
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttggactttgagcggtgttaccgggccgtggacagccgtgaccagcggttcgacgggtgg
ttctacacgggggtgacgtcgacggggatctattgtcggccgtcctgtccggcgatgacg
ccgaagcggcagaacgtccggttctttccctcggcggcggcggcgcagggtgcggggttg
cgggcctgccggcggtgccgcccggacgcctcccccggctccccggaatgggacgtacgg
gccgatgtggtggggcgggcgatgcggttgatcgccgacggggtggtggaccgggacggg
gtgccggggctggcggccaaactcgggtacaccgagcggcacctgcaccggctgctgcgg
gccgagttgggcgcggggccgttggcgctggctcgggcccaacgcgcacagaccgcccgg
acgctcatcgagaccaccgagctggggttggccgagatcgcgttcgccgccgggttcggc
agcgtccggcagttcaacgacacgctccgcgaggtgtacggggtggccccgtcgcagttg
cgcgcgggccgccggggcacgatcggcggcgcggggacggtgtcgctgcggttggcgtac
cgtccgccactgcacgccgccgcgctgctggacttcctcgcccggcgcacgctgccgggg
gtggacgaggtgcgcgacgggacgtaccaccgggggttgcggctgccacacggcaccggc
gaagcggccctgaccccggcggacgggtacgtggccgcgacgttgcgcctgaccgacctg
cgggacctggcgcccgccgtggcccgctgccgacacctcttcgacctcgacgccgacccg
gtcgccatcgatcaaaccctggccgcggatccggtcctagccccgccggtcgccgccgaa
cccggcatccgcgtcccccacgcgcccgacggcttcgagatcgccgtccgcgccatcacc
acccaacaggtctccctggcctccgcccgcaccaccctcacccacctcctcccccacccc
ctcccccaccccctccccaccccctgccccacctcgccaccccgcccggcggagttgatc
aagaggttttggtcgcggagagcgctccggagggacgcaaacttcttggtcaactcgccg
ggtttcctggtgcgggggaggtgttgggggtgggggatgggggtttcggatggatgggcg
gcggcgggaggcgattcgggggtggctcgggcggtggtcgagggagagctggagctggcg
ccgggtggggaccgggaggagacggtgcggcggttgctggcgattccggggatcgggccg
tggacggccggttacgtggcgatgcgtgccctcggtgacccggacgtcttcctccccacc
gacctcgcggtccgccggggcgccgccgccctcggcctgcccgacgacccgaagaccctc
gacgcgtacgccgcccgctggcgcccctggcgctcgtacgcggtgatccgcctttggaga
gcagcatga
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