Micromonospora endophytica: Jiend_38160
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Entry
Jiend_38160 CDS
T08807
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
meno
Micromonospora endophytica
Pathway
meno03420
Nucleotide excision repair
meno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Jiend_38160
03430 Mismatch repair
Jiend_38160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meno03400
]
Jiend_38160
Enzymes [BR:
meno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Jiend_38160
DNA repair and recombination proteins [BR:
meno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Jiend_38160
MMR (mismatch excision repair)
Other MMR factors
Jiend_38160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
PDDEXK_1
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
BCJ60394
LinkDB
All DBs
Position
3900285..3902630
Genome browser
AA seq
781 aa
AA seq
DB search
MLGLTTSWRNRPEILAVANALATPLRAAGARVPELHAALSVDEPIGHRSPRGAAAGTVHC
ALLSSYADEADWIADSLLAAWRGAARMPGVLPEQIPVALRPTTAVLVRLRSQIPAIAAAL
RARGLPVEVVGLGGLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALH
RRARAIATARRQLADDGGPEIVLDRLDEATLVEALADLGPAQAYSAEGYVRLRAYARELG
LLRYRLDQSLPELIADIERTTGLDVEVAVRAGGGGAGDAGLARGHLDALGDVAARFSGET
PGATLAGFLAYLAAAEDEERGLAPGEVEVVEGAVQILTAHAAKGLEWDVVAVAGLSRGVW
PGPVRNSDHWLGGLGVLPFPLRGDADGLPELALAEADDQRGVARAVADFTDAWRAHDERE
ERRLAYVALTRPRRLLLCSGHWWGEGTKRPRGPSALLREVHDACLAGETGYVIDEWASEP
TPDAANPTTEVVLRAEWPADPLGGRRPVLTEAAALVRRCLTEGDESVRSDEATATDPEVV
RWRREADLLLAERAELSRLSGPIDVTLPDHLSVTQLVALRRDPAALAGALRRPLPTEPNL
YARRGTAFHAWLEQRFGADRLLDTDELPGAADADAAPDEALAELQQRFLASEWADRTPIE
VEVPFATVIGGVVVRGRMDAVFRRPGDRFDVVDWKTGAAPSGPAAEVAAVQLAVYRLAWA
ELAGVPVDRVGAAFHYVRDGATVRPADLLDVEGLTALITAVPESASPAAAEPARPADAEP
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgggctgaccaccagctggcgtaaccggccggagatcctcgcggtggcgaacgcg
ctcgccaccccgttgcgggccgccggtgcccgggtgcccgagctgcatgccgcgctcagc
gtcgacgagccgatcgggcatcgcagcccgcgcggcgccgccgccggcacggtgcactgc
gcgctgctctcctcgtatgccgacgaggccgactggatcgccgacagcctgctggcggcc
tggcggggcgcggcccggatgcctggcgtgctgcccgagcagatcccggtcgcgctgcgc
ccgaccaccgcggtgctggtccggctgcgtagccagatcccggcgatcgccgccgcgctg
cgcgcgcgtggcctgccggtcgaggtggtcgggctgggtggcctgctggacacccccgag
gtccgggatgtggtgtgcacgctgcgggtgctggctgacccgacggacggtgccgcgctg
ttgcggctgctgaccggtgcgcgctggcggatcggcccgcgtgatctggtcgccctgcac
cgccgggcccgggccatcgccaccgcccgccggcaactggccgacgacggtggtccggag
atcgtgctggaccgtctcgacgaggcgacgctcgtcgaggcgctcgccgacctggggccc
gcgcaggcgtactcggcggagggctacgtgcggttgcgcgcgtacgcccgggagctgggc
ctgctccgctaccgcctggaccagtcgttaccggaactgatcgccgacatcgagcggacc
accggcctggacgtggaggtggcggtacgggccggcgggggcggtgccggcgacgccggc
ctggcccggggccacctggacgcgttgggtgatgtggcggcccggttcagcggggagacg
cccggcgccaccctcgccgggttcctggcctatctcgccgccgccgaggacgaggaacgg
gggctcgccccgggcgaggtggaggtggtcgagggggcggtgcagatcctcaccgcgcac
gccgccaaggggctggagtgggacgtggtcgcggtggccgggctgagccgcggggtgtgg
ccgggcccggtgcgtaactccgatcactggctcggtgggctgggtgtgctgcccttcccg
ttgcgcggcgacgccgacggcctgcccgagctggccctggccgaggccgacgaccagcgc
ggggtggcgcgggcggtggcggacttcaccgacgcctggcgtgcccacgacgagcgggag
gaacgccggctggcgtacgtggccctgacccgaccgcgccggctgctgctctgctccggc
cactggtggggggagggcaccaagcgaccccgggggccgtcggcgctgctgcgcgaggtg
cacgacgcctgcctggccggcgagaccgggtacgtgatcgacgagtgggcgtcggagccg
actccggacgcggccaaccccaccaccgaggtggtgctgcgcgccgagtggccggccgac
ccgctcggcggtcgccgtccggtgctgaccgaggcggcggcgttggtgcggcgctgcctg
accgagggcgacgagtcggtccggtcggacgaggcgacggcgaccgatccggaagtggtc
cggtggcggcgggaggccgacctgttgctggccgagcgggcggagctgagccggctctcc
ggtccgatcgacgtgacgctgcctgatcacctgtcggtgacgcagctggtggcgttgcgc
cgcgacccggcggcacttgccggtgcgctgcgccgcccgttgcccaccgaaccgaacctg
tacgcgcgccggggcaccgccttccacgcctggctggagcagcggttcggcgcggaccgg
ctgctcgacaccgacgagctgcccggcgcggccgacgccgacgccgcgccggacgaggcg
ctggccgagcttcaacagcgcttcctggccagcgagtgggccgatcgtacgccgatcgag
gtggaggtcccgttcgccaccgtcatcggcggcgtggtggtacgcggccggatggacgcg
gtgttccgccggccgggggaccgtttcgacgtggtcgactggaagaccggtgccgcaccg
tccgggccggccgccgaggtggccgccgtgcagttggcggtctaccggctggcctgggcg
gagttggccggtgtgccggtcgaccgggtcggtgcggccttccactatgtgcgcgacggc
gcgacggtccgcccggcggacctgctcgacgtcgaggggctcaccgcgttgatcacggcg
gtgccggagtccgccagcccggcggctgccgagccggcccgacctgccgacgcggagccg
tcctga
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