Micromonospora endophytica: Jiend_41860
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Entry
Jiend_41860 CDS
T08807
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
meno
Micromonospora endophytica
Pathway
meno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Jiend_41860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meno03019
]
Jiend_41860
03009 Ribosome biogenesis [BR:
meno03009
]
Jiend_41860
Enzymes [BR:
meno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Jiend_41860
Messenger RNA biogenesis [BR:
meno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Jiend_41860
Ribosome biogenesis [BR:
meno03009
]
Prokaryotic type
rRNA processing factors
Jiend_41860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
FakA-like_C
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BCJ60764
LinkDB
All DBs
Position
4288470..4290302
Genome browser
AA seq
610 aa
AA seq
DB search
MPTVVKIREPRRTVDEVQGVSGSTRLEAKRQRRRDGREQRRTRPPILSESEFLARREAVD
RVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSAATMAGNVYLGKVQNVLPSMEAAFVDIGR
GRNAVLYAGEVNWDTTGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHIALSGR
HLVYVPGGNASGISRKLPDTERKRLRDALKKLVPEGAGVIVRTAAEGASEDELARDVKRL
QAQWEDIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVLEGDESYDMVESYLSHV
SPDLVTRLRRHVGTTDVFAEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGK
YTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECL
GRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIIHTEPVPEKTRSGS
GSGSGGGGDKVKAVAAAGGTVAAEPASGSSRRRARKNAPAERTVVEVTETDTTTSVDADY
HDTMGYDLSRYETQTPAASDIADSQQGESARLAAPDDPDALGESDEEDATDGGSGRRRSR
RGGARRRTRP
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaccgtggtcaagatcagggaaccgcgccggaccgtggacgaggtgcagggcgtc
tccggttcgacccggttggaggccaagcgacagcgccgccgggacggccgcgagcagcgc
cggacccgcccgccgatcctcagcgaatccgagttcctggcccgccgggaggccgtcgac
cgggtgatggcggtacgccaacgcggagatcgtacgcagatcgcggtgctcgaggacggt
gtgcttgtcgagcactacgtcacccgtaactccgccgccaccatggccggcaacgtctac
ctcggcaaggtgcagaacgtgctgccgagcatggaagcggcgttcgtggacatcggccgg
gggcgcaacgcggtcctgtacgccggcgaggtcaactgggacaccaccggcctggaaggc
cgggctcgctcgatcgagcaggcgctcaagtccggtgactcggtgctggtgcaggtcacc
aaggacccgatcggtcacaagggtgcccggctgaccagccacatcgcgctctccggccgg
cacctggtctacgtgccgggcggcaacgcctcgggcatcagccgtaagctgccggacacc
gaacgtaagcgactgcgcgacgcgctgaagaagctggtgccggagggtgccggggtgatc
gtccggaccgcggccgagggcgccagcgaggacgagctggcccgggacgtcaagcggctc
caggcgcagtgggaggacatccaggccaaggccaccgagggtggcgcgccggtgctgctc
tacgaggagccggatctggtcatccgggtcgtccgggacctgttcaacgaggacttccgc
gagctggtccttgagggcgacgagtcgtacgacatggtcgagtcgtacctgtcgcacgtc
tcgccggacctggtcacccggctgcgccggcatgtgggcaccaccgacgtcttcgccgaa
taccgcatcgacgagcagattctcaaggggctcgaccggaaggtcttcctgccctccggt
ggtcacctggtgatcgaccggaccgaggcgatgacggtcgtcgacgtcaacaccggcaag
tacaccggcgcgggcggcaaccttgaggagacggtcacccgcaacaacctggaggcggcc
gaggagatcgtccgccagctgcggctgcgggacatcggcggcatcgtggtgatcgacttc
atcgacatggtgctggagtcgaaccgggagctggtgctgcgccggttgaccgagtgcctg
ggacgggaccggaccaagcaccaggtcaccgagatcacgtcgctggggctggtgcagatg
acccggaagcggatcggcgccgggctactggaagcgttcagcgagacctgcgactgctgc
aagggccgcgggctgatcatccacaccgagccggtgccggagaagactcgctcgggctcg
ggctcgggttccggcggcgggggcgacaaggtcaaggcagtcgccgcagccggcggcacg
gtggccgcagagccggcgagcgggtcgtcgcggcgacgggcgcgcaagaacgccccggcc
gagcggaccgtggtcgaggtcaccgagaccgacaccaccaccagcgtcgatgccgactac
cacgacaccatgggttacgacctgtcccggtacgagacccagacgccggccgcgtcggac
atcgccgacagccagcagggtgagtcagcccggctcgccgcaccggacgaccccgacgca
ctcggtgagagcgacgaagaggacgccaccgacggtggttccggccggcgacggtcccgt
cggggcggcgcgcgccgccgtacccgcccctga
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