Methylobacterium sp. NMS14P: LOK46_27795
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Entry
LOK46_27795 CDS
T10783
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mens Methylobacterium sp. NMS14P
Pathway
mens03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mens00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LOK46_27795 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mens03400
]
LOK46_27795 (ligD)
Enzymes [BR:
mens01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LOK46_27795 (ligD)
DNA repair and recombination proteins [BR:
mens03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LOK46_27795 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
WCS24883
LinkDB
All DBs
Position
complement(5853088..5855598)
Genome browser
AA seq
836 aa
AA seq
DB search
MSELLKPYREKRDFEASSEPRGRRGRKTAKARFVVQKHDARRLHYDLRLEMDGVLKSWAV
TRGPSLSPAEKRLAVRTEDHPLDYLRWEGAIPKGQYGGGTMIVWDIGSWEPVGDPAAGLE
KGHLEFVLRGERLGGRWHLVRMKGRGGEKKQPWLLMKAEDEHARREGDILGEHDASVLSG
RTNRDLAAGGEVRPDHAARAKVASTRVTKPASAQSPRARKGVLPPFVEPALATLVDAAPT
GEGWLYEIKHDGYRMQARIDGGTVKLSTRSGLDWTSKFEPIAKALEELKLHSALIDGEIV
VENASGISSFSALQQALADGDTGAALFYAFDLLYLDGKDIRALPLTERKALLLQSLDDAG
SADRIRFSEHLVDDGASMARHACRLGLEGIVAKRADAAYRSGRSDLWRKVKCTGSQEFVV
AGFMPSGTGPKSVGSLILGTHQDGTLVHVGRVGTGFGDAVARELRAKLEPLRIPAPPFDA
ELSPQARRNARWVEPRLVCEVTFRGWTDDGQLRHASFKTVRTDVAPDEVVREAAPAPPRV
PKRRTAEETVTLTHPDRVLWPDVGLTKEGLAEYYAEIADRILPHVIDRPLSLVRCPDGLG
SCFYQKHGWAGIDERLLRVLEGETGKAVVIGDLDGLRALVQASVLEIHPWGATAADPDRP
DRLVFDLDPGDGVAWTDLVAGALEVRERLRSSGFGAFVKTTGGKGLHVVVPVEPKAGWDE
AKAFSKRLASEMARDAPDRYVAIVSKKARDGRIFIDYLRNQRGATAVAAFSTRTRAGAPV
SVPVGWDELPSLGSGARFDVATLPGRLAALGKGFWAGFERAARPLEAAGKRGRRRT
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagctcctgaagccgtaccgcgagaagcgggatttcgaggcctcgtccgagccg
cggggacgccgcgggcggaagaccgccaaggcgcgcttcgtcgtccagaagcacgacgcc
cgacgcctgcactacgacctgcggctggagatggacggagtgctcaagagctgggccgtc
acccgcgggccgagcctgtcgccggccgagaagcggctcgcggtacggaccgaggaccat
cccctcgactacctgcgctgggaaggggcgatccccaagggccagtacggcggcgggacc
atgatcgtctgggacatagggtcctgggagccggtcggcgatccggccgccggcctcgag
aagggccacctcgaattcgttctgcggggcgagcggctcggcggccggtggcatctcgtg
cgcatgaagggccgcggcggcgagaagaagcagccgtggctgctgatgaaggccgaggac
gagcatgcccgccgcgagggcgacatcctcggcgagcacgacgcgtcggtcctgtcgggc
cggaccaatcgcgacctcgccgccggcggcgaggtcagacccgaccatgcggcacgcgcg
aaggtcgcctcgacgcgcgtgacgaagcccgcctcggcccagtccccgcgcgcccgcaaa
ggcgtgctgccgcccttcgtcgagcctgccttggcgaccctcgtcgacgcggcgccgacc
ggagagggctggctgtacgagatcaagcacgacggctaccgcatgcaggcgcgcatcgac
ggcggcaccgtgaagctgtcgacgcgctccggcctcgactggacgtcgaagttcgagccg
atcgcgaaggccctcgaggagctgaagctgcactccgctctgatcgacggcgagatcgtc
gtcgagaacgcgagcggcatctcgagcttctccgcgctccagcaggccctcgccgacggc
gacacgggcgcggcgctcttctacgccttcgacttgctctacctcgacggcaaggacatc
cgcgccctccccctgaccgagcgcaaggctctgctgctgcagagcctagacgatgcgggg
tccgccgaccggatccggttcagcgagcatctcgtcgacgacggtgcgtccatggcccgc
catgcctgccgcctcgggctcgaaggcatcgtcgccaagcgggccgacgcggcctaccgc
tccggacgaagcgatctctggcgcaaggtgaaatgcaccggctcccaggagttcgtcgtc
gcgggcttcatgccctccggcacgggcccgaaatccgtcggctcgttgatcctgggcacg
caccaggacggtaccctcgtccacgtcggtcgggtgggcacggggttcggcgacgcggtc
gcgcgcgagctccgggcgaagctggagcctctgcggataccggcacctccgttcgacgcc
gagctgtcacctcaggcgcgccgcaacgcccgatgggtggagccgcgcctcgtctgcgag
gtgaccttccgcggatggacggacgacggccagctgcggcacgcgtcgttcaagaccgtc
cggacagacgtggcacccgacgaggtcgtccgggaggcggcgccggcacccccacgggtg
ccgaagcggagaaccgcggaggagaccgtgacgctcacgcatccggatcgcgtgctctgg
cccgacgtcggcctgacgaaggagggcttggccgagtactatgccgagatcgccgaccgc
atcctgccgcacgtgatcgacaggcccctgtccctcgtccggtgcccggacggcctcggc
tcgtgcttctaccagaagcacggctgggccgggatcgacgaacgccttctccgcgtcctc
gaaggcgagaccgggaaggcggtcgtgatcggcgacctggatggcctgcgcgccctggtc
caggcgagcgtcctcgagatccatccctggggcgcgacggccgccgacccggatcggccg
gaccgcttggtcttcgatctggatcccggggacggggtggcctggaccgacctcgtcgcc
ggcgcgctggaggtccgagagcgtctgcgaagctcggggttcggcgccttcgtcaagacg
accggcggcaagggactgcacgtcgtcgtcccggtcgaaccgaaggccgggtgggacgaa
gcgaaggcattctccaagcgcctcgcctccgagatggccagggacgcgcccgaccgctac
gtcgcgatcgtgtcgaagaaggccagggacggccgcatcttcatcgactacctgcgcaac
cagcgtggtgcgaccgcggtcgcggccttctcgacccgcacccgcgcgggagcgccggtc
tcggtgccggtcggctgggacgaactcccgtccctcggttccggagcgcgtttcgacgtc
gccaccctgcccggtcgcctggcggcgctcggcaagggtttctgggccggcttcgagcgt
gccgcgcggcctctggaagcagccggtaaacgcgggcgtcgacgaacctga
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