Mesoplasma entomophilum: CS528_01115
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Entry
CS528_01115 CDS
T05159
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ment
Mesoplasma entomophilum
Pathway
ment03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ment00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CS528_01115 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ment03019
]
CS528_01115 (rnr)
03016 Transfer RNA biogenesis [BR:
ment03016
]
CS528_01115 (rnr)
Enzymes [BR:
ment01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CS528_01115 (rnr)
Messenger RNA biogenesis [BR:
ment03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CS528_01115 (rnr)
Transfer RNA biogenesis [BR:
ment03016
]
Prokaryotic type
tRNA degradation factors
CS528_01115 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
S1CSD-TOTE-2
S1_RRP5
RNase_II_C_S1
HTH_11
OB_RNR_1st
Pox_RNA_pol
Motif
Other DBs
NCBI-ProteinID:
ATQ35368
UniProt:
A0A3S5XYP9
LinkDB
All DBs
Position
238671..240785
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AA seq
704 aa
AA seq
DB search
MNKEIILQIVKENNETISINSLASKLNYFDFPILEKVLNELNEENAIALTTEKNVYLLGG
TYKKGNLRMNPKGFGFVNDILQPEEEAYFVPPVSLNGCFDSDEVIFKVIKDQDKTRAEIV
ELCLRVKEFLIGEIVRSYDGKFLDFIPSDQSFTGFRIRILNKQEFPIQEYQIVKAKIISV
KERLMFVRLKKVIGDARKASDRILSIAEEFEIRTEFEKATLKEAERVNIPVEKEVDEINK
RMKHSLLDKMVVTIDGIDSKDLDDAICVEKLDNGEFKLYVAIADVSHYVKPKTPLDKEAL
IRGNSTYLANRVLPMLPKILSDNLCSLNPNTKKFALACEMKFDKNGIMISKEIYETIMIS
KVRLNYNEVNEYIANKTWNHCDESKTMINQAIELFKLIEQVKIKRGTITFDVREPKVIMD
ENSNVIEIKARQTGESEKLIEQFMVSANEAVAEIVYEMELPFIYRNHDKPDEEDLITWYQ
SLKSFGIDPKLTPAEMLDPLNINKTLKRISEQTKDPIEEELLNLSLLRYMAKAKYELENI
GHFGLSSQCYTHFTSPIRRYSDLIVHRYLKQYVINKNYDKKALEINEAFIKKASVIINET
ETTSVDCEREVVKACTVEYMSDKIGNIYEGTISVALKFGIFVQLDNMVEGLVHISNLEPN
IVYDETNKILIKHDNTFYRMGQKVKIKVISADIRKRKIDFILVK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaaataatattacaaatagtaaaagaaaataatgagaccatatcaataaac
agtttagcttcaaagctaaactattttgattttcctatattagaaaaagtgttaaatgaa
ttaaatgaagaaaatgcaatagcgcttacaactgaaaaaaatgtttatttattaggagga
acttacaaaaaagggaatttaagaatgaatccaaagggttttggatttgttaatgacata
ttacagccagaagaagaagcttattttgtaccaccagttagtttaaatgggtgctttgat
agtgatgaagttatatttaaagttattaaagatcaagataaaacaagagctgaaatcgta
gaattatgcttgagagttaaagaatttttaattggtgaaatagttagaagttatgatggc
aagtttttagactttatacctagtgatcaatcatttacaggatttagaattagaatttta
aataaacaagaatttcctatccaagaatatcaaatagttaaagcaaaaataatttcagtt
aaagaaagattaatgtttgttaggctaaaaaaagttattggtgatgctagaaaagctagc
gatagaattttatcaattgcagaggaatttgaaattagaactgagtttgaaaaagcaact
ttaaaagaagcagaaagagttaacattcctgttgaaaaagaagttgatgaaattaataaa
agaatgaaacattctttacttgataaaatggttgttacaattgatgggattgattcaaag
gatttggatgatgcaatatgtgttgaaaaattagataatggtgagtttaaattatatgta
gctatcgctgatgtaagccattatgtaaaaccaaaaacaccactagataaagaagcatta
ataagaggaaattctacgtacttagcaaatagagttttaccgatgttaccaaaaatttta
agtgataatttatgttcattaaatcctaatactaaaaaatttgcattagcatgtgaaatg
aaatttgataaaaatggaattatgattagtaaagagatttatgaaacaattatgatctca
aaagtaagattgaattataatgaagttaatgaatatatcgcaaacaaaacttgaaaccat
tgtgatgaatcaaaaacaatgattaatcaagctattgaattatttaaattaattgaacag
gttaaaataaagcgtggaactattacatttgatgtacgtgaaccaaaagttataatggat
gaaaatagtaatgttattgaaattaaggcaagacaaacaggtgaatctgaaaaattaatt
gaacaatttatggttagtgcaaatgaagcagttgctgaaatagtttatgaaatggaattg
ccatttatttatagaaatcatgataaacccgatgaagaagatttaattacttgatatcaa
tcacttaaatcattcggaattgaccctaaattaactccagcagaaatgcttgatccttta
aatatcaataagacattaaaacgcattagcgaacaaacaaaagatcctatcgaagaagag
ttattgaacttatcacttctaagatatatggctaaagctaaatatgagttagaaaatatt
ggtcattttggattgtcaagtcaatgctatacacactttacttctccgatcagaaggtat
agcgacttaattgtccatcgatacttaaaacaatatgtaattaataaaaattatgataaa
aaagcattggaaataaatgaagcatttattaagaaagcatcagttattattaacgaaact
gaaacaactagtgttgattgtgagcgcgaagttgttaaagcatgtacagttgagtacatg
agtgataaaatcggtaatatatatgaaggaacaatatcggtagctttaaaatttggtatt
tttgtacaactagataatatggttgaaggtttagtccatatttcaaatctagaaccaaac
atagtttatgatgaaacaaataaaattttaattaagcatgataatacattctacagaatg
ggccaaaaagttaaaattaaagttataagtgctgatataagaaaaagaaaaattgacttt
attttagttaaataa
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