Massilia endophytica: LSQ66_01080
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Entry
LSQ66_01080 CDS
T09693
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
meny
Massilia endophytica
Pathway
meny03420
Nucleotide excision repair
meny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LSQ66_01080
03430 Mismatch repair
LSQ66_01080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_01080
Enzymes [BR:
meny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LSQ66_01080
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LSQ66_01080
MMR (mismatch excision repair)
Other MMR factors
LSQ66_01080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UGQ47103
LinkDB
All DBs
Position
complement(226607..228910)
Genome browser
AA seq
767 aa
AA seq
DB search
MQNLLNNLNPEQLAAVTLPPQNALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGVLAVTF
TNKAAKEMLARLSAMLPINTRGMWIGTFHGLCNRLLRTHYRDAALPQSFQILDSQDQLSM
IKRLLKQYNVDDEKYPPKTVMYFINNHKEQGLRAKDINAYDAMERKLVELYDLYDEQCQR
EGVVDFAELLLRTYELLSRNQPLREHYQQRFRHILVDEFQDTNNLQYNWLKLMSGHGSQY
GGALFAVGDDDQSIYAFRGANVGNMAAFESEFQVKNLIKLEQNYRSHGHILDAANMLIAN
NSRRLGKNLRTDAGHGEPVRVYEASSDLQEAQWIIEEAKNLIAEGASRSEIAVLYRSNAQ
SRVIEHALFSAGLPYTVYGGLRYFQRAEVKHAIAYLQLMDNPHNDSAFLRVVNFPARGIG
ARTLEQLQNAAEQYNISLYAAVPYMVGKAGNSLAAFVKLIEGMRFETQQMALPELVRVVL
EGSTLLQHYQNEKEGADRIENLEQMVNAATQFVSEEGYGQGAPAHLGPQAQAQAGSAIVN
ADGIEVLDADAPLATVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDNVF
ITGLEEGLFPHESSSKEDGGVEEERRLMYVAITRARKRLYMCFSQTRMLHGQTRYNMKSR
FFDELPEESLKWLSPKVQAHWFANKKSAWDDVTLAGGTDNAIAQRIAQKSGGSGWRIGES
VAHTKFGEGVIVNIEGSGSNCRAQINFGSFGMKVLDLSIAKLERISR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatctcctcaacaacctcaatcccgaacaactcgccgccgtcaccctgccgccg
cagaatgccctgatcctggcaggcgccggctcgggcaagacgcgcgtgctcaccacgcgc
atcgcctggctgatccagaccggccaggtgtcgccggccggcgtcctggctgtcactttt
accaataaggcggcgaaggagatgctggcgcgcttgtcggccatgttgccgatcaataca
cgcggcatgtggatcggcaccttccacggcctgtgcaaccgcctgctgcgcacccattac
cgcgacgccgccctgccccagtccttccagatcctggactcgcaggaccagctgtccatg
atcaagcgcctgctcaagcagtacaacgtggacgacgagaagtacccgccgaagacggtc
atgtacttcatcaacaaccacaaggaacagggcctgcgcgccaaggacatcaacgcctac
gacgccatggagcgcaagctggtggagctctacgacctgtacgacgagcagtgccagcgc
gagggcgtcgtggacttcgcggaactgctgctgcgcacctacgagctgctgagccgtaac
cagccgctgcgcgagcactaccagcagcgcttccgccacatccttgtggacgagttccag
gacacgaacaacctgcagtacaactggctcaagctgatgtccggccacggctcgcagtac
ggcggcgccctgttcgccgtgggcgacgacgaccagagcatctacgctttccgcggcgcc
aacgttggcaatatggcagccttcgagagcgagttccaggtgaagaacctgatcaagctg
gaacagaactaccgctcgcacggccacattctcgatgcggccaatatgctcatcgcgaac
aacagccgccgcctgggcaagaacctgcgcacggacgcgggccacggcgaaccggtacgg
gtgtacgaagccagctccgacctgcaggaagcgcagtggatcatcgaggaggcgaagaac
ctgatcgccgaaggcgcctcgcgcagcgagatcgcggtgctgtaccgctccaacgcgcaa
tcgcgcgtgatcgagcatgcgctgttctcggcgggcctgccctacacggtgtacggcggc
ctgcgctacttccagcgcgccgaggtgaagcacgccatcgcctacctgcagctgatggac
aatccgcacaacgattcggccttcctgcgcgtggtgaacttccctgcgcgcggcatcggc
gcgcgcacgctggagcagctgcagaacgcggccgaacagtacaacatctcgctgtatgcc
gcggtgccttatatggtgggcaaggcgggcaactcgctggccgccttcgtgaagctgatc
gaaggcatgcgcttcgagacgcagcagatggcgctgccggagctggtgcgcgtggtgctc
gaaggcagcacgctgctgcagcactaccagaacgagaaggaaggcgcggaccgcatcgag
aacctggagcagatggtgaacgcggccacgcagttcgtgtccgaggaaggctatggccag
ggagcgcccgcccacctggggccgcaggcgcaggcccaggcgggcagcgccatcgtgaat
gcggacggcatcgaggtcctggacgcggatgcgccgctggccacggtgatgtcgcccctc
tcggccttcctctcgcacgcttcgctggaagcgggcgacaaccaggcgcaggccgggcag
gacgcgctgcagctcatgaccgtgcactcggccaagggactggagttcgacaacgtcttc
atcaccggcctggaagagggcctgttcccgcacgagagcagctcgaaggaggatggcggc
gtggaagaggaacggcgcctgatgtacgtggccatcacgcgcgcgcgcaagcggctctac
atgtgcttctcgcagacccgcatgctgcacgggcagacgcgctacaacatgaagtcgcgc
ttcttcgacgagctgccggaagaatccctgaaatggctctcgcccaaggtccaggcgcac
tggttcgccaacaagaagtcggcctgggacgacgtgacgctggcaggcggcacggacaat
gccattgcccagcgcatcgcccagaagtccggcggcagcggctggcgcatcggcgaatcc
gtggcgcacaccaagttcggcgaaggcgtgatcgtgaacatcgagggcagcggcagcaac
tgccgcgcccagatcaacttcggcagctttggcatgaaggtgctggacctctccatcgcc
aagctggaacgcatcagccgctga
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integrated database retrieval system
