Massilia endophytica: LSQ66_03730
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Entry
LSQ66_03730 CDS
T09693
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
meny
Massilia endophytica
Pathway
meny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LSQ66_03730 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_03730 (xseA)
Enzymes [BR:
meny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
LSQ66_03730 (xseA)
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LSQ66_03730 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UGQ47604
LinkDB
All DBs
Position
complement(808304..809638)
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AA seq
444 aa
AA seq
DB search
MSDPNQVITVSALNQAVSRLLERSFPLTWIAGEISNFTRASSGHWYFTLKDDAAQVRAVM
FRGRSQFAGFTPREGDKVEVRALVTLYGPRGDYQINVEAIRRAGVGQLFEAFMRLKERLG
AAGWFDEDRKRPVPLFARTIGIVTSPQAAALRDVLTALRRRAPHVNIVLYPTLVQGQGAA
ERIAAQIDAASRRAECDVLIVCRGGGSIEDLWSFNEEAVAWAIVNCSMPVISGVGHETDF
TIADFAADLRAATPTAAAELAATPRADWVASLSADAADLRRAMRRTLNDASQTLDHLSRR
LLSPAAQIRQQRLKLLALSTAMMHANRAPLNQSRHALEKLAGRLAAQRPDLRAVRAHLAA
LQHRGGVCIASQLRHRREALNGLSAQLEMLNPQRTLERGYAIVRNEAGAILRAPAQLLPR
ESVTIRLAEGSAKVDVAAVQPLLD
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacccgaaccaagtcatcaccgtgagcgccctgaaccaggccgtcagccgcctg
cttgagcgctcctttcccctgacgtggatcgcaggcgagatctccaacttcacgcgcgcc
agttccggccactggtatttcaccctgaaggacgatgcggcccaggtgcgggccgtgatg
ttccgcggccgctcccagttcgcgggcttcacgccgcgcgaaggcgacaaggtggaggtg
cgcgccctcgtcaccctgtacgggccgcgcggtgactaccagatcaatgtggaggccatt
cgccgcgcaggcgtgggccagctcttcgaagccttcatgcggctcaaggaaaggctgggc
gccgcgggctggttcgatgaagaccgcaagcgccccgtgccattgttcgcgcgcaccatc
ggcatcgtcaccagcccccaggcggcggccctgcgcgatgtgctcacggcactgcgccgc
cgcgcgccccatgtgaacattgtgctctaccccaccctcgtgcagggccagggcgcggcc
gagcgcatcgccgcgcagatcgacgccgcctcgcgccgcgccgaatgcgatgtgctgatc
gtgtgccggggcggcggcagcatcgaagacctgtggagcttcaatgaggaagcggtggcc
tgggccatcgtgaactgcagcatgcccgtgatttcgggcgtgggccacgaaacggatttc
accatcgccgatttcgcggccgacctgcgcgccgccacgcccaccgccgccgccgaactg
gcggccacgccgcgcgcggactgggtcgcctcgctgagcgcggatgcggccgatctgcgc
cgcgccatgcgccgcacgctcaacgatgcctcgcagacgctggaccatctctcgcgccgc
ctgctcagccccgccgcccagatccgccagcagcgcctcaagctgctcgccctgtcgacg
gccatgatgcacgccaaccgcgcacccctgaaccagtcgcgccacgcgctggaaaagctg
gcgggacgcctcgccgcgcagcggccggacctgcgggcagtgcgcgcccacctggcagcc
ctgcagcaccggggcggcgtgtgcatcgccagccagctgcggcaccggcgcgaggcgctg
aacggcctgtcggcccagctggagatgctcaatccccagcgcacgctggagcgcggctat
gccatcgtgcgcaacgaagcgggcgccatcctgcgcgcgcccgcgcagctgctgccgcgc
gaaagcgtcaccatccggctcgcggaaggcagcgcaaaggtggacgtggcggcagtgcaa
cccttactggactaa
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