Massilia endophytica: LSQ66_06590
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Entry
LSQ66_06590 CDS
T09693
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
meny
Massilia endophytica
Pathway
meny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSQ66_06590 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meny03019
]
LSQ66_06590 (rnr)
03016 Transfer RNA biogenesis [BR:
meny03016
]
LSQ66_06590 (rnr)
Enzymes [BR:
meny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LSQ66_06590 (rnr)
Messenger RNA biogenesis [BR:
meny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSQ66_06590 (rnr)
Transfer RNA biogenesis [BR:
meny03016
]
Prokaryotic type
tRNA degradation factors
LSQ66_06590 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
RNase_II_C_S1
Rrp44_S1
OB_Dis3
DUF6237
Motif
Other DBs
NCBI-ProteinID:
UGQ49208
LinkDB
All DBs
Position
1427126..1429693
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AA seq
855 aa
AA seq
DB search
MAVGTKPSLNNNKTTELLNATHTIPSREDILGIFRSAKAPLDLRALALALKVKPDAHAVL
TRRLNAMERDGQIRSDTNGFYVLADHSEFIAGRVSAHRDGFGFVIPDEPGDDLFLSEREM
QKVLHGDKVLAKIVGHDRRGRPEGTIVEVVERGNTHIIGRLLKDNGVWIVAPEDKRIGQD
ILVSGAVGKAKSGQIVSVELTEQPGRFKQPVGRIVEVLGDMDDPGMEIEIAVRKFGVPHV
FSDAALKQAARLPDVVRQSDWGDRVDLRDVPLVTIDGEDARDFDDAVYCEPIKVGRSKAY
RLIVAIADVSNYVKPNDALDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRLTL
VCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVAAILGNTKGPEAARRPAIVPHLQNLYE
VYHALLKARLERGAIDFETTETYIVCNPAGKIEKIIPRTRNDAHKLIEECMLAANVCAAD
LLLRHKHPGTYRIHAGPTKEKLTQVRDFLKQVGLSLGGGDNPVARDYAELMKKIKDRPDA
NLLQTMLLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILAGKKYE
PKVEDKSVLNTTISTAMRRQQLKDKQEGKERKPAGDLTVWDALGVHCSANERRADEASRD
VEAWLKCYFMQDKLGEEFTGIITGVTTFGIFVQLDQLFVEGLVHITDLGGDYFQYDEARH
ELRGERTGKRYQLTGRVTVQVVRVDLESRKIDLRLADSETAQFSAPKKNRKARDDDFGDE
EDLQPQGRARKAAKSAGPTITPRASGNGKTGVGADGNYSYPGARAKAAPAKRSKAKTAAA
PARAAKSGSKSKKKR
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcggtacgaagccttcccttaacaataataagaccacagaacttttgaacgct
acccacaccattcccagccgcgaggatattctcggcatcttccgcagcgccaaggcgccg
ctcgacctgcgcgcccttgccctggccctgaaagtcaaacccgatgcgcacgccgtgctc
acgcgccgcctgaacgccatggagcgcgacggccagatccgctcggacaccaacggcttc
tacgtgctggccgaccattccgaattcatcgccgggcgcgtgagcgcccaccgcgacggc
ttcggcttcgtcattcccgacgaaccgggcgacgatcttttcctctccgagcgcgagatg
cagaaggtgcttcacggcgacaaggtgctggcgaagatcgtcggccacgaccgccgcgga
cgccccgaaggcaccatcgtcgaggtggtagaacggggcaacacccatatcatcggccgc
ctgctgaaggacaacggcgtctggatcgtggcgcccgaggacaagcgcatcggccaggac
atcctggtgagcggcgccgtgggcaaggccaagagcggccagatcgtcagcgtcgaactc
acggagcagccgggccgcttcaagcagcccgtgggccgcatcgttgaagtgctgggcgac
atggacgatcccggcatggagatcgagatcgccgtgcgcaagttcggcgtgccccatgtg
ttttccgatgccgccctgaagcaggccgccagactgcctgacgtggtgcgccagtccgac
tggggcgatcgtgtcgacctgcgcgacgtgccgcttgtgaccatcgacggcgaggacgcg
cgcgacttcgacgatgccgtgtactgcgagccgatcaaggtgggccgcagcaaggcctac
cgcctgatcgtggccattgcggacgtaagcaactacgtcaagccgaacgacgccctggat
gcggatgcgctggagcgcagcacctcggtgtatttcccgcgccgcgtgattcccatgctg
cccgagaagctgtccaacggcctgtgctcgctgaacccgcaggtggaccgcctgaccctc
gtctgcgacgcggtgatcacggccaagggcgagatcaaggcctaccagttctatccggcc
gtgattcactcggccgcgcgcctgacctacacggaggtggcggccatcctgggcaacacg
aagggcccggaggcggcgcgccgccccgccatcgtgccgcacctgcagaacctgtacgag
gtctatcacgccctgctcaaggcgcgccttgagcgcggcgccatcgacttcgaaacgacg
gagacctacatcgtctgcaacccggcgggcaagatcgagaagatcatcccgcgcacccgc
aacgacgcgcacaagctgatcgaggagtgcatgctggcggcgaacgtgtgcgcggcggac
ctgctgctgcgccacaagcaccccggcacctaccgcatccacgccggtcccaccaaggag
aagctcacccaggtgcgcgacttcctgaagcaggtgggcctgtccctgggcggcggcgac
aatccggtggcgcgcgattacgcggagctgatgaagaagatcaaggaccgcccggacgcg
aacctgctccagaccatgctgctgcgctccatgcagcaggcggtctacagcccggacaac
atcggccacttcggcctggcctatgaggcctacgcccacttcacgagcccgatccgccgc
tatccggacctgctgacccaccgcgccatcaaggccatcctcgctggcaagaagtacgag
ccgaaggtggaggacaagagcgtcctgaataccaccatttcgacggcgatgcgccgccag
cagctgaaggacaagcaggaaggcaaggagcgcaagccggccggcgacctcacggtgtgg
gatgcgctgggcgtgcactgctcggccaacgagcgccgcgccgacgaggcatcgcgcgac
gtcgaggcatggctgaagtgctacttcatgcaggacaagctgggcgaggagttcaccggc
atcatcaccggcgtgaccaccttcggcatcttcgtgcagctggaccagctcttcgtggaa
ggcctggtgcacatcacggacctgggcggcgactacttccagtacgacgaagcgcgccat
gagctgcgcggcgaacgcaccggcaagcgctaccagctcaccggccgcgtgaccgtgcag
gtggtgcgcgtggacctggagtcgcgcaagatcgacctgcgcctggccgacagcgaaacc
gcgcagttctccgcgccgaagaagaaccgcaaggcgcgcgacgacgacttcggcgacgaa
gaagacctgcagccgcaaggccgcgcgcgcaaggccgcgaagtctgccggccccaccatc
acgccgcgcgcttccggcaacggcaagacgggcgtgggcgcggacggcaactacagctat
cccggcgcgcgcgccaaggcggcgcccgccaagcgcagcaaggccaagacggctgcggcg
cctgcccgcgcggcgaagtccggcagcaagagcaagaagaaacgataa
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