Massilia endophytica: LSQ66_07995
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Entry
LSQ66_07995 CDS
T09693
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
meny
Massilia endophytica
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
meny03009
]
LSQ66_07995 (rimO)
Enzymes [BR:
meny01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LSQ66_07995 (rimO)
Ribosome biogenesis [BR:
meny03009
]
Prokaryotic type
ribosomal protein modification factors
LSQ66_07995 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
UGQ48397
LinkDB
All DBs
Position
1766480..1767889
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AA seq
469 aa
AA seq
DB search
MQSQPISRIQKPGSEGTPASTGPAPKVGFVSLGCPKALVDSEQILTQLRAEGYETAKSYD
GADLVIVNTCGFIDAAVQESLDAIGEALAENGKVIVTGCLGAKKDAEGRDLIQSIHPKVL
AVTGPHAVGEVMAEVHTHLPKPHEPFIDLLPPQGIKLTPKHYAYLKISEGCNHRCSFCII
PSMRGDLVSRPIAELMLEAENLFKAGVKELLVISQDTSAYGVDVKFRSGFWNGRPVKTHM
TQLTEALGELAKQYGAWVRLHYVYPYPHVDQIIPMMSGGHILPYLDVPLQHAHPDVLKRM
KRPASGEKNLERIQAWRAMNPDLVIRSTFIAGFPGETEAEFEYLLDFLKEAQIDRLGCFA
YSPVEGATANELENPVPEEVREERRGRVMLLQEEISRKRLQAKVGKTIRVLIDELTPSGA
IGRSAADAPEIDGVVHVKKPFEPHKKLAVGQFYDVEITRADAHDLWGEA
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcccaacccatttcccgtatccagaagcccggctccgaaggcacgcctgcgagc
accggcccagcgccgaaagtcggtttcgtgtcgctcggctgccccaaggcgcttgtcgac
tccgaacagatcctgacccagctgcgcgctgaaggctacgagaccgcaaagtcctacgac
ggcgcggacctggtgattgtgaacacttgcggcttcatcgacgccgccgtgcaggaatcg
ctggacgccatcggcgaggcgctggccgaaaacggcaaggtgatcgtcaccggctgcctg
ggcgcgaagaaggacgcggaaggccgcgacctgatccagtccatccacccgaaggtgctg
gccgtgaccggcccgcatgcggtcggcgaggtgatggccgaggtgcatacgcaccttccc
aagccgcacgagcccttcatcgatctgctgccgccgcagggcatcaagctcacgcccaag
cactacgcctacctgaagatttccgaaggctgcaatcaccgctgctcgttctgcatcatc
ccgtccatgcgcggcgacctggtttcgcgccccatcgcggagctgatgctggaagcggaa
aacctgttcaaggcaggcgtgaaggaactgctggtgatctcgcaggacacctcggcctat
ggcgtggacgtgaagttccgctcgggcttctggaacggccgcccggtgaaaacccacatg
acacagctcaccgaagccctgggtgaactggccaagcagtacggcgcctgggtgcgcctg
cactacgtctacccatatccgcacgtggaccagatcattccaatgatgagcggcggccat
atcctgccttacctggacgtgccgctgcagcacgcgcatcccgatgtgctgaagcgcatg
aagcgtcccgcttccggcgagaagaacctcgaacgcatccaggcatggcgcgccatgaat
cctgacctcgtgatccgctccaccttcatcgccggcttccccggcgagaccgaggcggaa
ttcgagtacctgctggacttcctgaaggaagcccagatcgaccgcctgggctgctttgcc
tactcgccggtggaaggcgccaccgccaacgaactggaaaacccggtgccggaagaagtg
cgtgaagagcgccgcggccgcgtcatgctgctgcaggaggaaatctcccgcaagcgcctg
caggccaaggtgggcaagaccatcagggtgctgatcgacgaactgaccccgagcggcgcc
atcggccgttccgctgccgacgcgcccgagatcgacggcgtggtgcatgtgaagaagcct
ttcgaaccgcacaagaagctggccgtgggccagttctacgacgttgaaatcacccgcgcc
gatgcgcacgacctgtggggcgaggcctga
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