Massilia endophytica: LSQ66_10080
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Entry
LSQ66_10080 CDS
T09693
Name
(GenBank) hypothetical protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
meny
Massilia endophytica
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meny03016
]
LSQ66_10080
Enzymes [BR:
meny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
LSQ66_10080
Transfer RNA biogenesis [BR:
meny03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
LSQ66_10080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
UGQ48784
LinkDB
All DBs
Position
complement(2269165..2269761)
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AA seq
198 aa
AA seq
DB search
MPQQDLFGGAPQPKPRTPQPSRKPAALEPYSWFFALRPGAADAMRIDVFSARLLSAHGVT
GKRIAPERLHISLDAVDASMVEEACLAADSVRLPAIEVHLDAAMTFSGGAIVLAGAKGAQ
GMNGVRHLRTTLGCAMADRGFKLKSSYEPHMTLGYDTRNSIGPVAIEPVVFKVAELTLVK
SHVGLTRHDVVRSWTLEG
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgccacagcaggaccttttcggaggcgcgccccagcccaagccccgcacgccccagcct
tcccgcaagcctgcggccttggagccgtacagctggttctttgccctgcgtcccggcgcg
gctgacgcaatgcgtatcgatgtgttctccgcgcggctgctctcggcccacggagtcaca
ggcaagcggatcgcaccggagcggctgcatatctccctcgatgcggtcgacgcatccatg
gtggaggaggcgtgcctggccgccgacagcgttcgcctgccagcaatcgaagtgcatctt
gacgccgcgatgacattttccggcggcgccattgttctcgcgggcgccaaaggagcgcaa
ggtatgaacggcgtgcgccatctgcgcaccaccttgggctgcgcgatggcggatcggggc
ttcaaattgaaatcgagctacgagccgcacatgacgctgggctacgacacacgcaacagc
atcggccccgtcgcgatcgagcctgtggtgttcaaggtcgcggaactcacgctcgtcaaa
agccacgtagggctcacgcgccacgacgtggtacgcagctggacgctcgagggctga
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