Massilia endophytica: LSQ66_11200
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Entry
LSQ66_11200 CDS
T09693
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
meny
Massilia endophytica
Pathway
meny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LSQ66_11200 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_11200 (recD)
Enzymes [BR:
meny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LSQ66_11200 (recD)
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LSQ66_11200 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
UvrD-helicase
PhoH
AAA_16
AAA_28
DEAD
SLFN-g3_helicase
Mg_chelatase
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UGQ48999
LinkDB
All DBs
Position
complement(2502062..2504014)
Genome browser
AA seq
650 aa
AA seq
DB search
MKTEAPALLAQIDALTEAGKLRRLSGAFARFIASLGQASPQLMLASLLLSELEGRGHSCL
VLDDLAGDPSGLLGWTEGEWSGLRAAAAPLPRNAKGWLALLQGCEQVWPVGDLDFKQPLV
LDGERLYLRRYWRDETTVAASVRRRAAATQAVDAGEVRRWLDRLFDHATREGGPDWQKTA
CAVALRGGLAVITGGPGTGKTYTVARLLALLFAMAGPDAAGLRIALAAPTGKAAARLKQS
IDGALEQLGERLGDALPLRELAGRMGAARTLHSLLGARPDTRSFAHHAGNPLDVDVLIVD
EASMIHLEMMASLLAALPDHARLILLGDKDQLASVEAGAVLGDLCYQAEAGGYSEETLAY
VRSAAGQEIPPAFAGDAGALAQRIVMLRQSRRFGGPIGQLAGAVNRGDAEAARQVLQADS
GGVLQWLDGAQPSDALHLAVEGRPGAGGGYRDYLAMLKSMPGPEQDYDAWVGRVLEAFER
FRLLCAVREGEWGVAGLNEAIEQRLEAARLIRRRGEWYVGRPVMVTRNDYATGVYNGDIG
LTLPDPARPGSLRVYFSDGETVRSVLATRLRNVETAYAMTVHKSQGSEFRHTVLVLPREG
GAVLARELVYTGITRAREYFTLVSPNAAVLAQAVAERTHRASGLRGQIAQ
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaagactgaggcaccggccctgctcgcccagatcgatgcgctcaccgaagcgggcaag
ctgcggcgcctgagcggcgccttcgcacgctttatcgcctcgctggggcaggcctcgccg
caactgatgctggccagcctgctgctctccgaactggaagggcggggccacagctgcctg
gtgctggacgatctggcgggcgacccgtccggccttctgggctggacggagggcgaatgg
agcggcctgcgcgccgccgccgcgccgctgccgcgcaacgccaagggctggctcgcgctg
ctgcagggctgcgagcaggtctggcccgttggcgacctggatttcaaacagcccttggtg
ctggacggcgaacgcctttacctgcgccgctactggcgcgacgagaccacggtggcggca
tccgtgcgccgccgcgccgcagccacgcaggctgtggatgccggcgaggtgcggcgctgg
ctggaccgcctgttcgaccacgccacccgcgagggcgggccggactggcagaagaccgcc
tgcgccgtggccctgcgcggcggcctggccgtgatcacgggcggccccggcaccggcaag
acctataccgtggcgcgcctgctggccctcctgttcgcgatggccggcccggatgcggcg
ggcctgcgcatcgcgctcgccgcgcccacgggcaaggcggcggcgcggctgaagcagtcc
atcgacggcgcgctggagcagctgggcgagcgcctgggcgatgccttgccgctgcgcgag
ctggcaggccgcatgggcgccgcgcgtaccctgcacagccttctgggcgcaaggccggac
acgcgcagcttcgcccaccacgcgggcaatccgctggacgtggacgtgctgatcgtggac
gaagcgtcgatgatccacctggagatgatggcgtcgctgctggcggccctgccggaccat
gcgcgcctgatcctgctgggggacaaggaccagctggcgtccgtggaagcgggcgccgtg
ctgggcgacctgtgctaccaggcggaggcgggcggctacagcgaagaaacgctggcctat
gtgcgcagcgcggcgggccaggagattccgcctgcgttcgcaggcgacgcgggcgcgctg
gcgcagcgcatcgtcatgctgcgccagagccgccgcttcggcggccccattggccagctg
gccggcgccgtcaaccggggcgacgccgaggccgcgcgccaggtgctgcaggcggacagc
ggcggcgtgctgcaatggctggacggcgcccagccttccgatgcgctgcacctggcggtg
gaagggcggcccggcgcgggcggcggctaccgcgactacctcgccatgctcaagtccatg
cccggccccgagcaggactacgacgcctgggttggccgtgtgctggaggccttcgagcgt
ttccgcctgctgtgcgccgtgcgcgaaggcgagtggggcgtggcgggcctgaacgaggcc
atcgaacagcgcctggaagcggcgcgcctgatacggcggcgcggcgaatggtatgtgggc
aggcccgtcatggtcacgcgcaacgactacgccacgggcgtctacaacggcgacatcggc
ctgacgctgcccgatcccgcccgtcccggctcgctgcgggtctacttctcggacggcgaa
acggtgcgcagcgtgcttgccacgcgcctgcgcaatgtggagacggcctacgccatgacg
gtgcacaaatcccagggctcggagttccgccacacggtgctggtgctgccgcgcgagggc
ggggcagtgctggcgcgggagctggtctacaccggcatcacgcgcgcgcgcgagtacttt
acgctggtgtcgccgaatgcggccgtgctggcgcaggcggttgccgaacgcacgcatcgc
gccagcggcctgcgcggacagatcgcgcaatga
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