Massilia endophytica: LSQ66_14785
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Entry
LSQ66_14785 CDS
T09693
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
meny
Massilia endophytica
Pathway
meny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSQ66_14785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meny03019
]
LSQ66_14785
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_14785
Enzymes [BR:
meny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LSQ66_14785
Messenger RNA biogenesis [BR:
meny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSQ66_14785
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LSQ66_14785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
SWI2_SNF2
Glyco_hydro_57
PGBA_C
DUF2152
Motif
Other DBs
NCBI-ProteinID:
UGQ45058
LinkDB
All DBs
Position
complement(3237317..3239017)
Genome browser
AA seq
566 aa
AA seq
DB search
MVTRKLNVREQRGVQRSGAARASRIRSLLRNVFGVDKLRAGQQRVIDSVLEGRDTLAIMP
TGSGKSLCYQIPASILPGTTVVVSPLISLMKDQLESLEEIGIGAAQLNSSLSREEEMEAL
ESVRSSQSRIVFCTPERLASADFLEVLKETDISLLVVDEAHCISQWGHDFRPAYLEIGAA
IRALGGPPVLALTATATDDVVQDIAQQLGVPRMNVINTGIYRPNLHYRVVQVTNPQEKID
QAMRLVRESPGVGIVYTATVKAAEELHALLEEAGESAAIYHGKLRASERKENQDLFMNGE
RRVMVATNAFGMGIDKSDTRFVIHLQVPANLEAYYQESGRAGRDGSDAECTLLYFQDDKR
VQQFFLVKHYPGAEELRAVYEAAAQLAPFSYAALKGALDELPDSKLKVCLKLLKDGKLLR
QNRKLEYLPTAREPRARDFEQRAAIYEQKQERDKEALEQMVAYAQSGYCRWKLLLDYFGD
DSAGIEHCGGCDNCLSPPAEAVEDVVLPAAVPPEPEPELPGFTVGSQVRVPKFDIGTVLS
VAGGQVTIEFPEHVTRTFMAEFVQPA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggtcaccagaaaactgaatgtgcgcgaacagcgtggcgtgcaacgcagcggcgctgcg
cgcgcgagccgcatccgcagcctgctgcgcaatgtcttcggcgtggacaagctgcgcgcc
gggcagcagcgcgtgatcgacagcgtgctggaaggccgggacaccctggccatcatgccc
acgggcagcggcaagtcgctgtgctaccagattcccgcttccatcctgcccggcaccacc
gtcgtggtctcgcccctgatatcgctcatgaaagaccagttggaaagcctggaggaaatc
ggcatcggcgcggcgcagctgaacagcagcctgtcgcgcgaagaggagatggaagcgctg
gagagcgtacgcagcagccagagccgcatcgtcttctgcacgcctgagcgccttgcctcg
gcggacttcctggaagtgctgaaggaaaccgacatctcgctgctcgtggtggacgaggcc
cattgcatctcgcaatgggggcatgacttccggcccgcttacctggagatcggcgccgcc
atccgcgcgctcggcggcccgccggtgctggcgctgacggccaccgccaccgacgacgtg
gtgcaggacatcgcgcagcagcttggcgtgccgcgcatgaacgtcatcaacaccggcatc
taccgtcccaatctgcactaccgcgtggtgcaggtgaccaatccccaggagaagatcgac
caggcgatgcggctggtgcgcgagtctcccggcgtgggcatcgtctacacggccaccgtg
aaggcggccgaggagcttcatgccctgctggaggaggctggcgagagcgccgccatctat
cacggcaaactgcgggcgagtgagcgcaaggaaaaccaggacttgttcatgaacggcgag
cggcgcgtgatggtggccaccaacgccttcggcatgggcatcgacaagagcgatacccgc
ttcgtcatccacctccaggtgcccgctaatctggaagcctactatcaggagtccggccgc
gcgggccgcgacggcagcgatgcggagtgcacgctgctctacttccaggacgacaagcgc
gtgcagcagttcttcctcgtgaagcactatcccggcgcggaggagctgcgcgcggtgtac
gaggccgccgcacagctggcgcccttcagctacgccgccctgaagggtgccctggacgag
ctgccggacagcaaactgaaggtttgcctcaagctcctcaaggacggcaagctgctgcgc
cagaaccgcaagctggaatacctgccgacagcgcgcgagccgcgcgcccgcgacttcgag
cagcgggccgccatctacgaacagaagcaggagcgcgacaaggaggcgctggagcagatg
gtggcgtacgcccagagcggctactgccgctggaagctcctgctcgactatttcggcgac
gattccgccgggatcgagcattgcggcggctgcgacaactgcctgtcgccccctgccgag
gcggtggaggatgtcgtactgcccgccgccgtaccgccggaacccgagcccgaactgccc
ggattcaccgtcggcagccaggtgcgcgtgcccaagttcgacatcggcaccgtgctctcg
gtggcgggcggccaggtcaccatcgaatttcccgaacacgtgacacgcaccttcatggcc
gaattcgtgcagcctgcctga
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