Massilia endophytica: LSQ66_15795
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Entry
LSQ66_15795 CDS
T09693
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
meny
Massilia endophytica
Pathway
meny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSQ66_15795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meny03019
]
LSQ66_15795
03009 Ribosome biogenesis [BR:
meny03009
]
LSQ66_15795
Enzymes [BR:
meny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LSQ66_15795
Messenger RNA biogenesis [BR:
meny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSQ66_15795
Ribosome biogenesis [BR:
meny03009
]
Prokaryotic type
rRNA processing factors
LSQ66_15795
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UGQ45251
LinkDB
All DBs
Position
3443484..3446468
Genome browser
AA seq
994 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFREGVDVRNASVKEALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRTVEELQ
WDLNYLMQLWRAIEGASKSAPGAFLIYQESSLVIRAIRDYYQPDIGEILIDTDDIYEQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIESRHRITVILIPNKHLDTPH
YKLERIKHDDPRLEDHAASYTMAEQAETDMAFSKRQKEDAKPRQEAVVKTITPDQPAPMV
DRSAAAAPAAPAKAAPVAAAPAEKGFFAKLIAFFTGKTEEPAKPAAPAIVSKPAGGERGE
RNARGPRGRNRGKGRGEREEREPGSRAGAEESTGKAAAEARPPRQPRPPREPREPREGAE
GQVEAKAPRGERAEKGERAERPPRPPREPREPRADKNVPAEAKAEELALAAAGVGPVGTG
TGTPENVGAVKSAGNAGPEGEEADGAEGGDEPRRRRRRGGRNRNRREREGAEGMEAAEGA
EGAEVVAAPVETVEEKLAARPAEDAPVVAEAPAAPVEAAPVAESAAPVVEAAAPVAEAAP
AVEAPAAVEAPAAAPVVQPAVQPEPVAAAPVVHAEEAAAPAVAAEPAEAEIAASGAGAPV
AQPAVEAPAPAPAPAPAPVAAAPAPAPAPAPAPAVDMNQVLEAAGLTMAATDPAKLRAAQ
EAAAQIQPPVRKPRERKPAPPVPDEPLIQVDTRR
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaggaagaattgcgcgtcgccattgtcgat
ggtcagaaactgatcgatatcgacatcgagaccgccggacgcgagcagcgcaagtccaat
atctacaaaggcgtcatcacccggatcgaaccctcgctggaagcctgcttcgtcagctac
ggcgaagaccgccacggtttcctgccgttcaaggaagtggcgcgcagctacttccgcgaa
ggcgtggacgtgcgcaacgcctccgtcaaggaagcgctgcgcgagggccaggaaatcatg
gtccaggtagagaaggaggaacgcggcaataaaggcgcggccctcacctccttcatttcc
ctggccggccgctacctggtgctgatgccgaacaacccgcgcgggggcggcgtgtcgcgc
cgcgtggaaggcgaagaacgccaggaactgcgcgaaaccatggacaagctggacctgccg
cagggcatgtccgtcatcgcccgcaccgcaggcatcggccgcacggtcgaagagctgcag
tgggacctgaactacctgatgcagctgtggcgcgccattgaaggcgcctccaagtccgcg
ccgggcgccttcctgatctaccaggaatcctcgctggtcatccgcgccatccgcgactac
taccagcccgatatcggcgaaatcctgatcgataccgacgatatctacgagcaggcgcac
cagttcatgagccacgtgatgccggacatggtgcaccgcgtcaagcgctacagcgacgac
gtgcccctgttctcgcgcttccagatcgaacaccagatcgaaacggcctactcgcgcacc
gtgcccctgccgagcggcggcgccatcgtgatcgaccacaccgaggccctggtctccgtg
gacgtgaactcggcccgcgccacccgcggctcggacatcgaaaccaccgccttccacacc
aactgcgaagcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggccaagaaccagcgcgaagtggaacagcgc
ctgaaggacgccctgcaccatgaccgcgcccgcgtccagatgggcaagatctcccgcttc
ggcctgatggagctctcgcgccagcgcctgcgcccttccctgtccgaaggctcgcacgtg
acctgcccgcgctgctcgggcaccggccatatccgcgataccgagtcctccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaactcggccgccatccacgtgcag
gtgccggtggacgttgccgccttcctgctgaacgaaaagcgcggcgaagtgctgaagatc
gaaagccgccaccgcattaccgtgatcctgatcccgaacaagcatctggacaccccgcac
tacaagctggaacgcatcaagcacgacgatccgcgcctggaagaccacgccgccagctac
accatggcagagcaggccgaaaccgacatggccttcagcaaacgccagaaggaagacgcc
aagccgcgccaggaagccgtggtcaagaccatcaccccggaccagccggcgccgatggtg
gaccgcagcgccgctgccgctcccgcagcgccggcgaaagccgcccctgtggcagccgct
ccggccgaaaaaggcttcttcgccaagctgatcgctttcttcaccggcaagaccgaagaa
cctgccaaaccggcagcccccgccatcgtgagcaagcctgcgggcggcgagcgcggcgaa
cgcaatgcacgcggcccgcgcggccgcaaccgcggcaagggccgcggcgagcgcgaggag
cgcgaaccgggcagccgtgcgggcgccgaggaaagcacgggcaaggcagctgccgaagcc
cgtccgccgcgccagccgcgtcctccacgcgaaccgcgtgagccgcgcgaaggcgccgaa
ggccaggtggaggcgaaagccccgcgcggcgagcgcgccgagaagggcgaacgcgccgag
cgcccaccgcgtccgccacgcgagccgcgtgaaccgcgcgccgacaagaatgtgccagcc
gaagccaaggctgaagaactggcgctggccgccgctggcgtcggcccggtcggcaccggc
acgggcacgcctgagaacgtgggcgccgtgaagtccgcgggtaatgcgggtccggaaggc
gaagaggctgatggcgccgaaggcggcgacgagccgcgccgccgccgccgccgtggcggc
cgtaaccgcaaccgccgcgagcgcgaaggcgccgagggcatggaagcggcagaaggcgcg
gaaggcgccgaggttgtcgccgcaccggtggaaaccgtcgaggaaaaactggcggcccgt
ccggcggaagatgcgccggtggtggctgaagcccctgccgcgccggtggaagccgctcca
gtggcggaatccgcagcgccggtagtggaagctgctgcgccggtggccgaagcggcccct
gctgtcgaagctccggctgcggtggaagcccctgccgccgccccagtggtccagcctgcc
gtgcagcccgagcctgttgccgcagcgcccgtggtgcatgccgaagaagccgcagcgccg
gctgtagcggccgaacctgccgaggcggaaatcgcagcgtcgggcgccggagctccggtt
gcacagccagctgttgaagcgcccgccccggcgcctgctccagccccggccccggtggca
gctgcgccggcgccggccccggctcccgcccccgcgccagcggtggacatgaaccaggtg
ctggaagccgccggcctgacgatggcggccaccgacccggccaaactgcgcgccgcgcag
gaagccgccgcccagatccagccgccggtccgcaagccgcgcgagcgcaagccagcgccg
ccggttccggacgagccgctgatccaggtcgacacccgccgctaa
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