Massilia endophytica: LSQ66_16970
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Entry
LSQ66_16970 CDS
T09693
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
meny
Massilia endophytica
Pathway
meny03030
DNA replication
meny03430
Mismatch repair
meny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LSQ66_16970 (dnaE)
03430 Mismatch repair
LSQ66_16970 (dnaE)
03440 Homologous recombination
LSQ66_16970 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meny03032
]
LSQ66_16970 (dnaE)
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_16970 (dnaE)
Enzymes [BR:
meny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LSQ66_16970 (dnaE)
DNA replication proteins [BR:
meny03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LSQ66_16970 (dnaE)
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LSQ66_16970 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Mrr_cat
RMI2
Motif
Other DBs
NCBI-ProteinID:
UGQ45465
LinkDB
All DBs
Position
complement(3710913..3714449)
Genome browser
AA seq
1178 aa
AA seq
DB search
MAVAEQEEGAAAAVPAGPDFVHLRVHSEYSIVDGLVRIDDLVKAAAKDRQAALAVTDLAN
LFGMVKFYKAARGKGVKPIVGCDVWIQNDENREKPFRIMLFAKNRMGYLQLCELLSLAWL
TNQYKGRAEIRTEWLAELASKTYELLPGESGANGLIALSGAQFGDIGQAIDNGNLELAEA
NAAKWASIFPGHFYIEIQRAGQANQEAQVRHSVALAAKLRLPVVATHPVQFMSQEEFIAH
EARICIAEGEMIANAKRVKRFNEQMRFLSQAEMRELFADLPAALQNSVEIAKRCNLTLTL
GKPQLPNFPTPGMTIDEFLVAETKKGLEERLVHLFPNPEEREKQRPRYEERLAFENETII
KMKFPGYFLIVAEFIQWGKNNGVPIGPGRGSGAGSLVAYCLKITDLDPLKYNLLFERFLN
PERVSMPDFDIDFCQEKRELVIQHVKDLYGRDAVSQIATFGTMAAKGAIRDVGRVLDFGY
NFCDGISKLIPFKPGKPVSIAEAIEEEPLLKERLENEEEVKQLLDLAQQVEGITRNIGMH
AGGVLIAPGKLTDFCPLYTQSGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVNY
IRELDPADKDFDLATVPLTDRPTYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIA
LVALYRPGPMDLIPDFCKRKHGEKFDYPDPRTEGILSETYGIMVYQEQVMQMAQIIGGYS
LGGADMLRRAMGKKKAEEMAEHREIFRKGAGERGLTTEKADEIFDLMEKFAGYGFNKSHA
AAYALLSYHTAYLKHHHTAAFMAANMSLTMDDTEKVKILVEDAIEVCGLKILPPDVNLSA
YRFRPDGPAPSVTGKKVTAIRYGLGGVKGAGQNAIEAIIAAREAGGPFTSLFDFCKRVDK
KQINRRTIEALIRSGAFDSFGVDRAVLFASVGFAMECAEQEARAANQVSLFGGDDSDLVA
PPEYVQAMPWTDRQKLAEEKIALGYYLSGHMFDAYQAEARRFARTKLSELEPSRDQRMMC
GVITGIRTQMTQRGKILIVTLDDKSAVVEVTVYNEVFEANKKCFKEDEFLCVTGKVSEDR
FTGGLRISAEKVHDITSARLQYGRQLGWLQPQAIAPAKLQEVLAPHRDDYGLPIQMRIKP
QGIECVLQLGDDWRVAPSDELRTALEQVLGAKDIAVEY
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcagtagcagaacaggaagagggcgcggcggcagccgtgccagcgggacccgatttc
gtccacctgcgggtgcactccgagtactccatcgtcgatggcctggtgcgtatcgacgac
ctggtgaaagcggccgccaaggacaggcaggcggccctcgccgtcaccgacctggccaac
ctgttcggcatggtcaagttctacaaggccgcgcgcggcaagggcgtgaagcccatcgtg
ggctgcgatgtctggatccagaacgacgaaaaccgcgaaaaacccttccgcatcatgctg
ttcgcgaagaaccgaatgggctacctgcagctgtgcgaactgctgtcgctcgcgtggctc
acgaaccagtacaaggggcgggccgagatccgcaccgagtggctggcggagctggcgtcg
aaaacctacgagctgctgcccggcgaaagcggcgccaatggcctgatcgcgctctccggc
gcacagttcggtgacatcggccaggccatcgacaacggcaacctggagctcgccgaggcg
aatgcggcgaagtgggcctccatcttccccggccacttctacatcgagatccagcgcgcg
ggccaggccaaccaggaggcgcaggtgcgccattccgtggcgctggcggccaagctgcgc
ctgcccgtggtggcgacgcatccggtgcagttcatgtcgcaggaagagttcatcgcccac
gaggcccgcatctgtatcgccgaaggcgagatgatcgccaatgccaagcgcgtgaagcgc
ttcaatgagcagatgcgcttcctctcgcaggccgaaatgcgcgagctcttcgccgacctg
cctgccgcgctgcagaactccgtggaaatcgccaagcgctgcaacctcacgctcacgctg
ggcaagccgcagctgccaaacttccccacgccgggcatgaccatcgacgagttcctggtc
gccgaaacgaagaagggcctggaagagcgcctggtgcacctgttcccgaatccggaggag
cgcgagaagcagcgcccgcgctacgaggaacgcctggccttcgagaacgagaccatcatc
aagatgaagttcccgggctacttcctgatcgtggcggaatttatccagtggggcaagaac
aatggcgtgccgatcggtccgggccgtggctcgggtgcgggctcgctggtggcctactgc
ctgaagattaccgacctcgatccgctgaaatacaacctgctgttcgagcgtttcctgaac
ccggagcgtgtgtcgatgcccgacttcgacattgacttctgccaggagaagcgcgaactg
gtgatccagcacgtgaaggacctgtacggccgcgacgccgtgtcccagatcgccaccttc
ggcacaatggcggcgaaaggcgccatccgcgacgtgggccgcgtgctggacttcggctac
aacttctgcgacggcatctcgaagctcattcccttcaagcccggcaagccggtctccatc
gccgaggcgatcgaggaggagccgctgctcaaggaacgcctggaaaacgaggaggaggtg
aagcagctgctggacctcgcccagcaggtggaaggcattacccgtaacatcggcatgcac
gctggcggcgtgctgatcgcgccgggcaagctcaccgacttctgcccgctgtacacccag
tccggcgactcgggcgtggtgtcgcagtacgacaaggacgacgtggaagccgtgggcctg
gtgaagttcgacttcctgggcctgaccacgctcaccatcctggaccgcgccgtcaactac
atccgcgagctggacccggccgacaaggacttcgacctggccacggtgccgctcaccgac
cgccccacctacgagctgctgaccaaggccaaaacggtggccgtgttccagcttgaatcg
cgcggcatgcagggcatgctgaaagatgcgcgtcccgaccgcttcgaggacatcatcgcg
ctggtggcgctctaccgtccgggcccgatggacctgattcccgacttctgcaagcgcaag
cacggcgagaagttcgactatcccgatccccgcaccgaaggcatcctgtccgaaacctac
ggcatcatggtgtatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcg
ctcggcggcgcggacatgctgcgccgcgcgatgggcaagaagaaggccgaggagatggcc
gagcaccgcgaaatcttccgcaagggcgcgggcgagcgcgggctcaccaccgagaaggcc
gacgagatcttcgacctgatggaaaagttcgcgggctacggcttcaacaagtcgcacgcc
gccgcctacgcgctgctgtcctatcacactgcctacctgaagcaccaccacaccgcagcg
ttcatggcagccaacatgtcgctgaccatggacgacaccgagaaggtgaagatcctggtg
gaggatgcgatcgaggtctgcggcctgaagatcctgccgccggacgtcaatctctccgct
taccgcttccgtcccgacggccctgcgccttcggtcacgggcaagaaggtcacggccatc
cgctacggcctgggcggcgtgaagggcgccggccagaacgccatcgaagcgatcatcgcc
gcgcgcgaggcgggcggtcctttcaccagcctgttcgacttctgcaagcgggtggacaag
aagcagatcaaccgccgcaccatcgaagcgctgatccgcagcggcgccttcgacagcttc
ggcgtggaccgcgccgtgctcttcgcatccgtgggcttcgccatggaatgcgccgagcag
gaagcgcgcgccgcgaaccaggtcagcctgttcggcggcgacgacagcgacctggtggcc
ccgccggaatacgtgcaggccatgccctggaccgaccgccagaagctggccgaggaaaag
atcgcgctgggctactacctgtccggccacatgttcgacgcctaccaggcggaagcccgg
cgcttcgcgcgcaccaagctctccgagctggagccctcgcgcgaccagcgcatgatgtgc
ggcgtcatcaccggcatccgcacccagatgacccagcgcggcaagatcctcatcgtcacg
ctggacgacaagagcgcggtggtggaggtcacggtctacaacgaagtcttcgaggcgaac
aagaagtgcttcaaggaagacgagttcctgtgcgtgacgggcaaggtgtcggaagaccgc
ttcacgggcggcctgcgtatctcggccgagaaggtgcacgacatcaccagcgcgcgcctg
cagtacggccgccagctgggatggctgcagccgcaggccattgcgcccgccaagctgcag
gaagtgctggcgccgcaccgcgacgactacggcctgccgatccagatgcgcatcaagccg
cagggtatcgaatgcgtgctgcagctgggggacgactggcgcgtggcgccttcggatgaa
ctgcgcacggccctggagcaggtgctgggcgcgaaggacatcgccgtcgaatattga
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integrated database retrieval system
