Massilia endophytica: LSQ66_17120
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Entry
LSQ66_17120 CDS
T09693
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
meny
Massilia endophytica
Pathway
meny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSQ66_17120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meny03019
]
LSQ66_17120
Enzymes [BR:
meny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSQ66_17120
Messenger RNA biogenesis [BR:
meny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSQ66_17120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
UGQ45495
LinkDB
All DBs
Position
complement(3752454..3753923)
Genome browser
AA seq
489 aa
AA seq
DB search
MSEIETTAATGEAPAAPAQVRFADFGLSPAIQRALDDQGYEYPTPIQAKAIPVVLQGRDV
MGAAQTGTGKTASFSLPIIQMLLPHASASMSPARHPVRALVLVPTRELAVQVAENVAAYC
KHTPLRSTVVFGGMDMKPQTAILRNGVEIVIATPGRLLDHVEQKSVSLGQVQMLVMDEAD
RMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKRLANSFLKDPVLIEVARSNATADK
VTQVVYKVGEEHKRDAVAHILRQRDAKQVIVFSNTKIGASRLARSLEQEGMKAAAIHGDK
TQQERMAALEAFKKYEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRA
GASGDAISIYSDKDERLLADIEKLIKQTIKRGELEGFVPSGRSEERHGDRRAARRGADTD
RGAERGRPAERSARPAGPSPRREKVDPWFLKPYEPSRSGSAAPAPAPASGSITKAKPRVA
ALLGGLPKP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagattgaaaccaccgccgccactggcgaagcgcccgccgcacccgcccaggtg
cgttttgccgacttcggcctgtcgccggccatccagcgcgcactggacgaccagggctac
gaataccccacgcccatccaggccaaggccattcccgtggtgttgcagggacgcgacgtc
atgggcgcggcccagaccggcacgggcaagaccgccagcttctccctgcccatcatccag
atgctgctgccgcacgccagcgcgagcatgagcccggcgcgccaccccgtgcgcgccctg
gtgctggtgcccacccgcgaactggccgtgcaggtggccgagaacgtggccgcctactgc
aagcacaccccgctgcgttcgaccgtggtcttcggcggcatggacatgaagccgcagacg
gccatcctgcgcaacggcgtcgagatcgtgatcgccacgccgggccgcctgctggaccac
gtggagcagaagagcgtgtccctgggccaggtgcagatgctggtgatggacgaggcggac
cgcatgctggacatgggcttcctgcccgacctgcagcgcatcatcaacctgctgcccaag
cagcgccagaacctcatgttctcggccaccttctcgcccgagatcaagaggctggcgaac
agcttcctgaaggacccggtgctgatcgaggtggcgcgcagcaacgccaccgccgacaag
gtgacccaggtggtgtacaaggtgggcgaagaacacaagcgcgacgccgtggcccatatc
ctgcgccagcgcgacgccaagcaggtgatcgtgttctcgaacaccaagatcggcgcctcg
cgcctggcgcgcagcctggagcaggagggcatgaaggccgccgccatccacggcgacaag
acgcagcaggagcgcatggccgcgctggaagcgttcaagaaatacgagatcgacgtgctg
gtagccaccgacgtggcggcgcgcggcctggatatttccgacctgccctgcgtcatcaac
tacgacctgccgtataacgcggaagactatgtgcaccgcatcggccgcaccggccgcgcg
ggcgcctcgggcgacgccatctccatctattcggacaaggacgagcgcctgctggccgat
atcgagaagctgatcaagcagaccatcaagcgcggcgaactggaaggcttcgtgccttcc
ggccgcagcgaagagcgccatggcgaccgccgggcggcccgccgcggcgccgacaccgac
cggggcgccgagcgtggccgtcccgccgagcggagcgcccgccccgccggtccctccccc
cgccgcgagaaggtcgacccctggttcctcaagccctatgagccgagccgcagcggcagc
gccgcgccggctcccgctccggcgtcgggcagcatcaccaaggccaagccgcgcgtggcc
gcgctgctgggcggcctgcccaagccctga
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