Massilia endophytica: LSQ66_18720
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Entry
LSQ66_18720 CDS
T09693
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
meny
Massilia endophytica
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meny03016
]
LSQ66_18720 (thpR)
Enzymes [BR:
meny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
LSQ66_18720 (thpR)
Transfer RNA biogenesis [BR:
meny03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
LSQ66_18720 (thpR)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
UGQ45801
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All DBs
Position
4086733..4087239
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AA seq
168 aa
AA seq
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MIANHSPKLFFALWPDDAVRSALAKLQAPVQGRLIPPEKLHLTLAFLGHQPAERLPVLRG
ILESLSVPPLRLEIDCYGYFTKPRIAWAGMSRIPPELNMLYEDLMAKLGEEGFAPATHGA
FRPHITLAREAKAAPPRQPFEAVIWEVREAALVESVMATGQYLPLAPR
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgatagcaaatcacagccccaaactattttttgcgctctggccggacgatgcggtacgc
agcgcgctggcgaagctgcaggcgcccgtgcagggccgcctgattccgccggagaagctg
catctcacgctggccttcctcggccaccagcccgccgaacggctgcccgtgctgcggggg
attctggagagcctgtccgtgccgcctttgcggctggagatcgactgctacggatatttt
acgaagccgcgcattgcctgggcaggcatgtcgcgcattcctccggagctgaacatgctc
tacgaggacctgatggcgaagctcggcgaagaaggtttcgcgcccgccacgcacggcgcc
ttccgcccccatatcacgctggcccgcgaggcgaaggcggcgccgcccaggcagcctttc
gaagcggtgatatgggaagtgcgcgaagccgcgctggtggagtcggttatggcgacggga
cagtatctgccgctggctccgcgctga
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