Massilia endophytica: LSQ66_20205
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Entry
LSQ66_20205 CDS
T09693
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
meny
Massilia endophytica
Pathway
meny03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSQ66_20205 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meny03021
]
LSQ66_20205 (rpoB)
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_20205 (rpoB)
Enzymes [BR:
meny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSQ66_20205 (rpoB)
Transcription machinery [BR:
meny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSQ66_20205 (rpoB)
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSQ66_20205 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UGQ46067
LinkDB
All DBs
Position
complement(4415453..4419562)
Genome browser
AA seq
1369 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYENFLQEHTPVSARKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQLRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVSILLKAIGMTPEQILANFFVFDNFNLRSE
GGELEFVAERLRGEVARFDIVNPKDGKVIVAKDKRINAKHVREIEGAGVKHISVPEDYLL
GRVLAKNIVDPETGEVVANANDELTEETLGKLREANIGTIQTLYTNDLDQGAYISQTLRI
DDTADQTAARVAIYRMMRPGEPPTEESVEALFNGLFYSADRYDLSAVGRMKFNRRVGRDE
LTGDMTLSNDDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVER
AVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRK
VENSVVTDKIDYLSAIEEGRYIIAQANAKINDKGQLIDELVSAREAGETILVSPERIQYM
DVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSG
TTVQALRGGVVDYIDAGRVVIRVNDEEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKV
GDRVAKGDVIADGASTDLGELALGQNMTVAFMPWNGLNFEDSILISENVVKDDRYTSIHI
EELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVQAGDTLVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDEL
KRYRLDLNDQMRIVEGDAFQRLEKMLIGKVVNGGPKKLAKGAKITKEYLADLDKFHWFDI
RPADEDAATALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRL
QSGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPADVVLNPLGVPSRMNVGQILETHLGWA
AKGLGLRIGEMLQQEIKVAEMRKFLTTVYNETGAKEDIANFSDEEIMNLAQNLKKGVPFA
TPVFDGAHESEIRRMLDLAYPDEIASKLGMTDSKNQVTMYDGRTGEAFERKVTVGVMHML
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV
KSDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaaacgcattcgcaaatccttcgcgaagcgcgccaac
gtccacaacgttccgttcctgctggcgacccagctcgagtcttacgaaaacttcttgcag
gaacacactccggtgtctgcccgcaagaacgaaggcctgcaatcggccttcaccagtatc
ttccctatcgtttcgcacaacggtttcgcacgcctggagttcctctcctacgtgctgggc
gaccctgccttcgatgtgaaagagtgccagctgcgtggcctgaccttcgcgtccccgctg
cgcgccaaagtgcgcctggtgatcctggacaaggaatccccgaccaagccggtcgtgaag
gaaatgaaggagcaggaagtctacatgggcgaactgcccctgatgaccaccaccggttcc
ttcgtgatcaacggcaccgagcgtgtcattgtgtcgcagctgcaccgttcgccgggcgtg
ttcttcgagcacgaccgcggcaagacgcactcgtccggcaagctgctgttctcggcccgc
atcatcccctaccgcggctcctggctggacttcgagttcgacccgaaggacatcctgtac
ttccgcgtcgaccgccgccgcaagatgccggtgtcgatcctgctgaaggccatcggcatg
acgccggagcagatcctggcgaacttcttcgtcttcgacaacttcaacctgcgctcggaa
ggcggcgaactcgagttcgtggccgaacgcctgcgcggtgaggtggcgcgcttcgacatc
gtcaatccgaaggacggcaaggtcatcgtcgccaaggacaagcgcatcaacgccaagcac
gtgcgcgaaatcgaaggcgccggcgtcaagcacatctccgtgccggaagactacctgctg
ggccgcgtgctggccaagaacatcgtcgatccggaaacgggcgaagtggtggccaacgcc
aacgacgagctgaccgaggaaaccctgggcaagctgcgcgaagcgaacatcggcaccatc
cagaccctgtacacgaacgacctggaccagggcgcctacatctcgcagaccctgcgcatc
gacgacaccgccgaccagacggccgcgcgcgtggccatctaccgcatgatgcgtcctggc
gaaccgcctaccgaagagtcggtggaagccctgttcaacggcctgttctacagcgccgac
cgctacgacctgtctgccgtgggccgcatgaagttcaaccgccgcgtgggccgcgacgag
ctgaccggcgacatgaccctgtccaacgacgacatcctggccgtgatcaagatcctcgtc
gagctgcgcaatggccgcggcgaagtggacgacatcgaccacctgggcaaccgccgcgtg
cgctgcgtgggcgaactggcggagaaccagttccgcgccggcctggtgcgcgtggagcgc
gccgtgaaggaacgcctgggccaggccgaagccgacaacctgatgccgcacgacctgatc
aactccaagccgatttcggccgccatccgcgagttcttcggttcgtcccagctgtcgcag
ttcatggaccagaccaacccgctgtccgagatcacccacaagcgccgtgtttccgcactg
ggcccgggcggcctgacgcgcgaacgcgccggcttcgaggtgcgcgacgtgcacccgacc
cactacggccgcgtgtgcccgatcgaaacgcctgaaggcccgaacatcggcctgatcaac
tcgctggcactgtatgcccgcctgaacgagtacggcttcctggaaacgccttaccgcaag
gtggagaacagcgtcgtcaccgacaagatcgactacctgtccgccatcgaggaaggccgc
tacatcattgcccaggcaaacgccaagatcaatgacaagggccagctgatcgacgaactg
gtgtccgcgcgtgaagcgggcgagaccatcctcgtgtcgcccgagcgcatccagtacatg
gacgtggccccgggccagatcgtgtccgtggcagcgtcgctgattccgttcctggagcac
gacgacgcgaaccgtgcactgatgggcgccaacatgcagcgccaggccgtgccctgcctg
cgtcctgaaaaggcgctggtcggcaccggcatcgagcgcaccgtggcggtcgactccggc
accaccgtgcaggccctgcgcggcggcgtggtggactacatcgatgcaggccgcgtggtg
atccgcgtgaacgacgaagaagcgcaggctggcgaagtcggcgtggacatctacaacctg
atcaagtacacccgttccaaccagaacaccaacatcaaccagcgtccgatcgtgaaagtg
ggcgaccgcgtggccaagggcgacgtgatcgccgacggcgcatcgaccgacctgggcgaa
ctggcgctgggccagaacatgaccgtggccttcatgccatggaacggcctgaacttcgag
gactcgatcctgatctcggaaaacgtcgtgaaagacgaccgttacacctcgatccacatc
gaagaactgtccgtggtggcccgcgacacgaagctgggcgcggaagaaatcacccgcgac
atctcgaacctggccgaaaaccagctggcgcgcctggatgaatcgggcatcgtgtacatc
ggcgccgaagtgcaggccggcgacaccctggtcggcaaggtgacgccgaagggcgaaacc
cagctgaccccggaagagaagctgctgcgcgccatcttcggcgaaaaggcatcggacgtg
aaagacacctcgctgcgcgtgccttcgggcatggtcggcaccgtgatcgacgtgcaggtg
ttcacccgcgaaggcatcccgcgcgacaagcgcgcccagcagatcatcgacgacgagctg
aagcgctaccgcctggacctgaacgaccagatgcgtattgtggaaggcgacgccttccag
cgtctggaaaaaatgctgatcggtaaagtcgtgaacggcggtccgaagaagctggccaag
ggcgccaagatcaccaaggaatacctggccgatctggacaagttccactggttcgacatc
cgccctgcggacgaagacgctgccaccgccctggaagccatcaaggaatccatcgccgag
aagcgccaccagttcgacctggccttcgaagagaagcgcaagaagctgacgcaaggcgac
gagctgcagcctggcgtgcagaagatggtcaaggtctacctggccgtgaagcgccgcctg
cagtccggcgacaagatggcaggccgccacggtaacaagggtgtggtctcgcgcatcgtg
ccggtagaagacatgccatacatggccgacggcacgcccgcggacgtggtgctgaacccg
ctgggtgttccgtcccgtatgaacgtgggccagattctggaaacccacctgggctgggca
gcgaagggcctgggcctgcgcatcggcgaaatgctgcagcaggagatcaaggttgcggag
atgcgcaagttcctgaccaccgtgtacaacgagaccggtgcgaaagaggacatcgccaac
ttcagcgacgaagagatcatgaacctggcgcagaacctgaagaagggtgtgccgttcgcg
accccggtgttcgacggtgcgcacgaatccgaaatccgccgcatgctggacctggcgtat
ccggacgagatcgcgagcaagctgggcatgaccgattcgaagaaccaggtcaccatgtac
gacggccgcaccggcgaagccttcgagcgcaaggtcaccgtgggcgtgatgcacatgctg
aagctgcaccacctggtcgacgacaagatgcacgcgcgctccaccggtccttactcgctg
gtgacgcagcagcctctgggcggtaaagcccagttcggcggccagcgcttcggcgagatg
gaggtgtgggcactggaagcctacggcgcatcctacgtgctgcaggaaatgctgaccgtg
aagtccgacgacgtgaacggccgtaccaaggtgtacgagaacctcgtcaagggcgatcac
gtgatcgatgccggcatgccggaatcgttcaacgtgctggtgaaagagatccgttccctg
ggtatcgatatcgacctggaacgcaactaa
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