Massilia endophytica: LSQ66_23225
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Entry
LSQ66_23225 CDS
T09693
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
meny
Massilia endophytica
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meny03032
]
LSQ66_23225 (gyrB)
03400 DNA repair and recombination proteins [BR:
meny03400
]
LSQ66_23225 (gyrB)
Enzymes [BR:
meny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LSQ66_23225 (gyrB)
DNA replication proteins [BR:
meny03032
]
Prokaryotic type
DNA Topoisomerases
LSQ66_23225 (gyrB)
DNA repair and recombination proteins [BR:
meny03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LSQ66_23225 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
HATPase_c_3
PipB2_N
Motif
Other DBs
NCBI-ProteinID:
UGQ46643
LinkDB
All DBs
Position
complement(5062862..5065360)
Genome browser
AA seq
832 aa
AA seq
DB search
MSESQNEPQVQAKSEEYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI
DEALAGHCTEIHVTIHSDNSISVTDNGRGIPVGLKMDDKHEPKRSAAEIVLTELHAGGKF
DQNAYKVSGGLHGVGVSCVNALSKLLRVTIRQNGKVHQMDFVRGIPQNREIEMVDGVAVS
PIKVIGETDKRGTDVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVNIKLSDQRTGKE
ELFAFEGGTRGFVEYINKAKNVLHPTVFQATGERQSDQGTTISVDVSMQWNDAFNEQVLC
FTNNIPQRDGGTHLTGLRAAMTRVINKYIDENDFAKKAKVEISGDDMREGLTCVLSVKVP
EPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLMEKPNDAKIICGKIVEAARAREAARKA
RDLTRRKGVMDGLGLSAKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLRG
KVLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRT
LLLTLFYRQMPQLVERGHIYIAQPPLYKVKAGRDERYLKDDLEEAGYMMNVALNTAVLTP
REGAEPIQGEALGELARQYNLANAVMTRLTRVIDRAALTAIMTGVALNLDTVDGAQASAQ
ALAANMNDSSVKVSVRSDEMSEKHALVIERMHHGNVKVSVIDADFVQGADYAVLAKAAAT
FTGLIGEGAFVRRGEGERTKESAVVDFHQAMQWLRDEAERTVSKQRYKGLGEMNPEQLWE
TTMDPTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALRAGNIDV
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagccaaaacgaaccacaagtccaggccaagtccgaagagtacggcgcctcg
tcgatccagatcctggagggtctggaagcagtccgcaagcgtcccggcatgtatatcggc
gacacctcggacggcaccggcctgcaccacctggtgttcgaggtgctggacaactcgatt
gacgaagcgctggccgggcactgcacggaaatccacgtcaccatccactcggacaactcg
atctccgtcaccgacaacggccgcggcattcccgtgggcctgaagatggacgacaagcac
gagccgaaacgctccgccgccgaaatcgtgctgaccgagctgcacgcgggcggcaagttc
gaccagaacgcctacaaggtgtccggcggcctgcacggcgtgggcgtgtcctgcgtgaac
gcgctgtccaaactgctgcgcgtaaccatccgccagaacggcaaagtgcaccagatggat
ttcgtgcgcggcattccgcagaaccgcgaaatcgaaatggtcgacggcgtggccgtatcc
ccgatcaaggtgatcggcgaaaccgacaagcgcggcaccgacgtgcacttctgggccgac
gaagaaatcttcacgcacgtggaattccactacgagattctggccaagcgtatccgcgaa
ctttcgttcctgaacaacggcgtgaacatcaagctttccgaccagcgcaccggcaaggaa
gagctgttcgccttcgagggcggcacgcgcggcttcgtggagtacatcaacaaggccaag
aacgtgctgcaccccaccgtgttccaggccacgggcgagcgccagtcggaccagggcacc
accatttcggtagacgtttccatgcagtggaacgacgccttcaacgaacaggtgctgtgc
ttcaccaataacattccgcagcgcgacggcggcacccacctgaccggcctgcgcgccgcc
atgacgcgcgtgatcaacaagtacatcgacgagaacgacttcgccaagaaggccaaggtg
gaaatctcgggcgacgacatgcgcgaaggcctgacctgcgtgctctccgtgaaagtgccg
gagccgaagttctcctcgcagaccaaggacaagctggtgtcttccgaagtgcgcggcccg
gtcgaagagattgtggccaagacgctgacggacttcctgatggagaagccgaacgacgcc
aagatcatctgcggcaagatcgtggaagcggcgcgtgcgcgcgaagcggcccgcaaggcg
cgcgacctcacccgccgcaagggcgtgatggacggcctgggcctctcggccaagctggcc
gactgccaggaaaaggatcccgcgctgtccgaactgtacatcgtggagggtgactccgca
ggcggctcggccaaacagggccgcgaccgcaaattccaggccatcctcccgctgcgcggc
aaggtgctgaacgtggaaaaggcgcgcttcgagaagatgctctcctccgagcagatcacc
actctcatcgcaacgctgggcacctccatcggcccggatgaattcaacgccgacaagctg
cgctaccaccgcatcatcatcatgaccgacgcggacgtggacggcgcccacatccgcacc
ctgctgctcacgctcttctaccgccagatgccgcagctggtggagcgcggccacatctac
atcgcccaaccgccgctgtacaaggtgaaggccggccgcgacgagcgctatctgaaggac
gacctggaagaagcgggctacatgatgaacgtggcgctcaacaccgccgtgctcaccccg
cgcgaaggcgcggagccgatccagggcgaagcgctgggcgaactggcgcgccagtacaac
ctggccaatgccgtgatgacccgcctgacccgcgtgatcgaccgcgcggcgcttaccgcc
atcatgaccggcgtggcgctgaacctggacaccgtggacggcgcccaggcatcggcacag
gcactggcagcgaacatgaacgacagcagcgtgaaagtctccgtgcgttcggacgaaatg
tccgagaaacacgcgctggtgatcgagcgtatgcatcacggtaacgtgaaagtcagcgtc
atcgacgccgacttcgtgcaaggtgcggactacgccgtgctggccaaggccgctgccacc
ttcacgggcctgatcggcgaaggcgccttcgtgcgccgcggcgaaggcgagcgcaccaag
gaaagcgccgtggtggacttccaccaggccatgcagtggctgcgcgacgaagccgagcgc
accgtgtccaagcagcgctacaaaggtctgggcgagatgaatcccgagcagctgtgggaa
accaccatggacccgaccgtacgccgcctgctgaaagtgcagatcgaagacgccatcgcc
gccgaccagatcttcaccaccctcatgggcgacgacgtggaaccacgccgcaacttcatc
gaatcgaacgcgctgcgcgcagggaatatcgacgtgtaa
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