Massilia endophytica: LSQ66_24560
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Entry
LSQ66_24560 CDS
T09693
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meny
Massilia endophytica
Pathway
meny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSQ66_24560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meny03019
]
LSQ66_24560
03009 Ribosome biogenesis [BR:
meny03009
]
LSQ66_24560
Enzymes [BR:
meny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSQ66_24560
Messenger RNA biogenesis [BR:
meny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSQ66_24560
Ribosome biogenesis [BR:
meny03009
]
Prokaryotic type
rRNA helicases
LSQ66_24560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
UGQ46894
LinkDB
All DBs
Position
5366543..5368663
Genome browser
AA seq
706 aa
AA seq
DB search
MSATASSSPLFADLSLSAPLLKALKEVGYEAPSPIQASTIPHLLENRDVLGQAQTGTGKT
AAFALPILSRIDIRQSAPQALVLAPTRELAIQVAEAFQRYAAHIPNFHVLPIYGGQSYGP
QLSALRRGVHVVVGTPGRVIDHLEKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILQET
PETRQTALFSATMPSQIKRIATTYLRNPAEVTVAAKTSTAENIRQRYWLVSGMHKLDALT
RILEAENFDGMIIFSRTKLGTEELAERLQARGFSAAAINGDMQQAARERTIGQLREGKID
ILVATDVAARGLDVERISHVVNYDVPYDPESYTHRIGRTGRAGRSGEAILFITPRERNLL
KLIERTTRQPVSAMELPTIKAVNDVRIAKFKDQIGATLAEGGLEQFQSLIEEFERERNIP
AIEIAAALAKMARGNVPLLLDKKRETGWHEDGKRPEKAERTERPERAERSMPKKERVPRE
SEPGMQTYRIEVGYQHGVKPGNIVGAIANEGGIDSKYIGRIEIYDDFTVLDMPDDLSADT
LSTLAGIRVAGQALRISRDGEAPPAAPAPTPKKPKARGLDAVVAEAAQEEQPAPKKKKEK
APKGELRMRPYRVEVGSRHSATPSNLVGAIANESGLEARYIGRIEIFDDYSMLEMPDGMP
DEIFKHLGKVWVGGQQLKLSLADSMPPETAKHTPPKKPAQGKGKKK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacagcatcatcctcccccctgtttgccgatctttccctgagcgcccccctg
ctcaaggccttgaaggaggtcggctacgaagcgccgtcgcccatccaggcctcgaccatt
ccccatctgctggagaaccgcgatgtgctgggccaggcccagacggggaccggcaagacg
gccgccttcgcgctgcccatcctgtcccgtatcgacatccgccagagcgcgccccaggcc
ctggtgctggcgcccacgcgcgaactggcgatccaggtggccgaggctttccagcgctat
gccgcccatatcccgaacttccacgtgctgccgatctacggcggccagagttacgggccc
cagctctccgccctgcggcgcggggtgcatgtggtggtgggcacgccgggccgcgtgatc
gatcacctggagaagggctcgctcgacctgagcaagctgaaaaccctggtgctggacgag
gcggacgagatgctgcgcatgggctttatcgacgatgtcgagcgcattcttcaggaaacg
cccgagacgcgccagaccgcgctgttctcggccaccatgccgagccagatcaagcgcatc
gccactacctacctgcgcaatccggcggaagtgacggtggcggccaagaccagcaccgcc
gagaacatccgccagcgctactggctggtgagcggcatgcacaagctcgacgcgctgacc
cgcatcctggaggccgagaacttcgacggcatgatcatcttctcgcgcaccaagctggga
accgaggagctggcggagcgcctgcaggcgcgcggcttttcggcggcggccatcaacggc
gacatgcagcaggcggcacgcgagcgcaccatcggccagctgcgcgaagggaagatcgac
atcctcgtcgccaccgacgtggcggcgcgcggcctggacgtggagcgcatcagccatgtg
gtgaactacgacgtgccttacgacccggagagctacacgcaccgcatcggccgcaccggc
cgcgcgggccgcagcggcgaagcgattctcttcattacgccgcgcgagcgcaacctcctg
aaactgatcgagcgcaccacgcgccagccggtcagcgccatggagctgccgaccatcaag
gcggtcaacgacgtgcgcattgcgaagttcaaggaccagatcggcgcgaccctcgccgag
ggcggattggaacagttccagtccctgatcgaggaattcgagcgcgagcgcaacatcccc
gccatcgagatcgccgccgcactggcgaagatggcgcgcgggaacgtgcctctcctgctg
gacaagaagcgcgagacgggctggcacgaggacggcaagcgtccggagaaggcggagcgc
actgaacgcccggagcgcgccgagcgcagcatgccgaagaaggagcgcgtgccgcgcgag
tccgagccgggcatgcagacctaccgcatcgaagtgggctaccagcacggtgtcaagccg
ggcaatatcgtgggggcgatcgccaacgaaggcggcatcgactcgaagtacatcggccgc
atcgaaatctacgacgacttcacggtgctggacatgccggacgacctgagcgccgatacc
ctgtccacgctggcgggcatacgcgtggcaggccaggcgctgcgcatcagccgcgacggc
gaggcgccgcccgcggctcccgccccgacgccgaaaaagcccaaggcgcgcggcctggat
gcggtggtggccgaagccgcgcaggaggaacagcccgcgccgaagaaaaagaaggagaag
gctcccaagggcgagcttcgcatgcggccctaccgcgtggaggtgggcagcaggcattcc
gcgacgccgtcgaacctcgttggcgccatcgccaacgagagcggcctggaagcgcgctat
atcggccgcatcgagatcttcgacgactattcgatgctggagatgccggacgggatgccg
gacgagatcttcaagcacctgggcaaggtctgggtcggcggccagcagctcaagctgagc
ctcgcggacagcatgccgccggaaacggccaagcatacgccgccgaagaagcctgcgcag
ggcaagggcaagaagaagtaa
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