Candidatus Moranella endobia PCVAL: MPC_467
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Entry
MPC_467 CDS
T02613
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
meo
Candidatus Moranella endobia PCVAL
Pathway
meo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPC_467 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meo03019
]
MPC_467 (rne)
03009 Ribosome biogenesis [BR:
meo03009
]
MPC_467 (rne)
Enzymes [BR:
meo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MPC_467 (rne)
Messenger RNA biogenesis [BR:
meo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MPC_467 (rne)
Ribosome biogenesis [BR:
meo03009
]
Prokaryotic type
rRNA processing factors
MPC_467 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGJ61467
LinkDB
All DBs
Position
518515..521070
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AA seq
851 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESTGHEQKKANIYKGKITRIESSLEAAFVNY
GAERHGFLPLKEISQEYFPPQYSAHGRPNIKDVLREGQEVIVQVGKEERGNKGAALTTFI
SLAGSYLVLMPNNPRARGISRRIEGDSRIELKEALSSLTLPDGMGLIVRTAGIGKSADAL
QWDLTFRLKHWQVIKQAAEKRPAPFLIHQESNVIARAFRDYLRPDIGEILIDNPKVLNIA
KQHIAALGRPDLTNKIKLYSGEISLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTRGVDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPACHQRKVE
NCLRELVCQDRARIQIGHISNFGLLELSRQRLRPSLGESSHHVCPRCSGTGTIRDNESLS
LAILRLIEEEALKDNTHEVHAIVPVPIASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMQ
TPNYMVLRVRKGEEASILSYMLPQLHEAEMIQTAEDFTSERKRVEKTAQAELVMSDQSLV
NEQLPYSANKATKANAVTLRNVGNARGLFDRLVASLQSIIGIPMPQHPENSNVEALIASS
SAESATKRNNEQIRAVQNSRQNCQNIRDYNRQKRNKNYTEIDNFNEIIDKKQHQDQLQQK
QQQKQPGSEPGQEDRKRRLVQKIEAISTNTEVISDSNYTTREADKLIYDQPHHQRRTLTN
QISVVDQVNILHESQIFDNSINNLTVFNAVKKQHDDIENFNNNKNTMQDTQDISNANNSR
FEDNQTSLPRRSRRSPRHLRVSGQRRRRYRSGRYLIASPVVTLTSAVISPEIASGKVWVS
YLEQKKPVVRI
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgccactcaacaggaagaattacgtgttgctttggtagat
ggccagcgtctgtatgatcttgatattgaaagtacgggacatgaacagaaaaaagccaat
atttacaaaggtaaaattacacgaattgaatcaagtctggaagctgcatttgtgaattat
ggtgctgaacgccatggctttcttcctctaaaagaaatttcccaagaatattttcctcca
caatattctgcacacggtcgaccaaacatcaaagatgtactacgtgaaggtcaggaagtc
atcgtgcaggttggtaaagaagaacggggtaataagggagcagcactaacaacctttatc
agcttagccggcagttatttggtacttatgcctaataatccgcgcgcacgtgggatttca
cgccgcattgaaggagactctcgcatagagttaaaagaggcactatcatcattaacactt
ccagacggcatggggcttattgtccgcactgctggtattggaaaatcagccgatgcgctg
caatgggatcttacttttcgtttaaaacactggcaggtaattaaacaagctgccgaaaaa
cgcccagctccatttttgattcaccaggagagtaatgttattgcaagagcttttcgcgat
tatttacgacctgatattggtgaaatactaatcgacaatcctaaggtacttaacatagca
aaacagcatattgcggcgcttggtcgcccggatcttaccaataaaattaaactttacagt
ggtgaaatttctctatttagccactaccagattgaatcacagattgaatctgcttttcag
cgtgaagtaaggttaccctcaggcggatcaattgtgattgataccactgaggcccttact
gcaattgatattaactctgcacgttccacccgtggcgttgatattgaagaaaccgctttt
aatactaacctagaagctgccgatgagatcgctcgtcagctacgcctacgtgacctaggt
ggtcttattgtaattgacttcattgatatgactcctgcatgtcatcagcgcaaagtagaa
aattgcctacgcgaattagtgtgtcaggatcgtgctcggattcaaatcggacatatctcc
aattttggtttattagaactctcccgtcaacgcctgcgtccatcgctgggtgaatcaagt
catcacgtctgcccccgttgcagtggcactggtaccatccgtgataacgaatccctttcg
cttgccatattacgtcttattgaagaagaagcactgaaagataatacccacgaagtgcat
gcaatagtgccagttcctattgcttcttatttgctcaatgaaaaacgtgaagccgtatct
gcaatagagaaacgccaaggtggtgtcagagccattatcgtcccgaatgaccaaatgcag
acccctaattacatggttttacgtgtgcgtaagggcgaagaagcgtctattttaagctat
atgctaccgcaattacatgaagccgagatgatacagactgctgaagattttacttcagag
cgtaagcgtgtagaaaaaacagcgcaggctgagttagtcatgtccgatcaatcgctggtg
aatgagcagctgccatactctgcaaataaagccactaaagctaatgctgtcactttgcgg
aacgttggtaatgctcgcggcctttttgaccgtctggttgctagcttacaatcgattatt
ggcatacccatgccacaacatcctgaaaatagtaacgtcgaagcgttaatagcatcgtct
tctgcagagtcagcaactaagcgtaataacgaacagattcgtgctgtgcagaacagtagg
caaaattgccaaaatattcgtgattataatcgtcaaaagcggaataagaactacaccgag
attgataattttaacgagataattgacaagaagcaacatcaagatcagctacaacaaaaa
caacaacaaaagcaacctggtagtgaacctggtcaagaagatcgcaaacgacgactcgtg
cagaaaatagaagcaatatcaacaaacaccgaggtcatatcagacagtaactatactacc
agagaagcggataaactgatttatgaccaacctcatcatcagcgtcgtacactaaccaat
caaattagcgtagtagatcaggtaaatatacttcatgaatctcagatattcgacaattcg
atcaataatttgactgtattcaatgcggtcaaaaaacaacatgatgatatcgaaaatttt
aataataataagaatacgatgcaagatacgcaagatatcagcaatgcaaacaacagtaga
tttgaagacaaccagactagcttgccacgtcgttctcgccggtcacctcgtcatttacgc
gttagcggtcaacgccgtcgccgttatcgttccggacgttatctaattgcctcaccggtg
gtaacgcttacaagtgccgtaatatctccagaaatagcctcgggtaaagtatgggtgagt
tatcttgagcaaaaaaaaccggtggtaagaatataa
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