| Entry |
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| Symbol |
srmB
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| Name |
(GenBank) DEAD/DEAH box helicase domain protein
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| KO |
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| Organism |
mep Methylovorus sp. MP688
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:mep00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPQ_1198 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:mep03019]
MPQ_1198 (srmB)
Enzymes [BR:mep01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MPQ_1198 (srmB)
Messenger RNA biogenesis [BR:mep03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MPQ_1198 (srmB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(1203850..1205475)
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| AA seq |
541 aa
MSTVVENAAGFAQLGLAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKT
AGFTLPLLHLLQGRPGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGV
GINPQVAQLKKPLDILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRV
LALLPKQRQNLLFSATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKR
DMVSHLIKQNNWQQVLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKD
GSLPVLVATDIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEE
IKLLKGIERLIKREIPRVEVEGFVPSPVDKSAASEEREPRAPRPRQGQPRQGQPRQNQAR
QSQPRDSQASPSQPRQPRENAARPGGQPRQGKPAAANANGARNGAQPQGQRRPQSGKAGG
ANGAPQGNRKAQATADAGKPLSEAARHQALPQTPIFAPKPGPRHMPKGPRNGSGGGGGRG
R |
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| NT seq |
1626 nt +upstreamnt +downstreamnt
ttgtctaccgtagttgaaaacgccgctggctttgcccagctcggccttgccgaacccatt
ttgcgtgcgattgccgatgctggctacaccacgcccacccccattcaattgcaggccatc
ccccaggtattaaccgggggagacctgctggctggcgcccagaccggcaccggcaaaacc
gccggtttcaccctgccgctgctgcatctgctgcaaggccgtcccggcaaaaataaggcc
ggacagccacgctgcctgatcctgacacccacacgcgagctggctgcccaggtagaagaa
tccgtacaaacctatggcaaatacctgccgctgaaatccatggtgatgtttggtggcgtg
ggaatcaacccacaggtcgcccaactgaaaaagccactggatattctggtggcaacccct
ggccgcttgctggatcacgccaaccagaaaaccgtggacctgtcggccgtggaaatcctg
gtgctggacgaagctgaccgcatgctggacatgggctttatccgcgacatcaagcgcgtg
ctggccctgttgccaaagcagcggcagaacctgctgttctcggccaccttctccgatgaa
atcaaggcgctggccgatggcctgctgcataacccgggctttgtggaagtggcgcgccgc
aataccgcgtctgaactggtggagcaaaccgtgcatctggtgcgccagagccacaagcgc
gacatggtcagccacctgatcaagcagaacaactggcagcaggtgctgattttcacccgc
accaagcatggcgccaaccgcctggccgacaagctggtcaaagatggcatccccgccgct
gccattcacggcaacaagagccagtccgcccgtaccaaggcactggcgcaattcaaggat
ggcagcctgccggtgctggtcgcgactgacattgcagcgcgcgggctggatattgaccag
ctgccgcaagtggtcaactttgagctgccgaatgtggcagaagattatgtgcatcgtatc
ggccggaccggtcgtgcaggcgctacgggcgctgccgtatcgctggtcgatgaagaagaa
atcaagctgctgaaaggcattgagcgcctgatcaaacgcgaaattccacgtgtggaagtc
gaaggctttgtaccatcgccggtagacaaatcggccgccagcgaagagcgcgagccacgc
gctccgcgccctcgtcaaggccaaccgcgtcagggccagccgcgccagaatcaagcacgc
caaagccaaccgcgtgattcgcaagcttcaccatcgcaaccgcgccagccaagagaaaat
gcagcccgtcccggtggtcagccacgccagggcaaaccagctgcggccaatgcgaatggc
gcacgcaacggcgcccagccgcaaggccaacgccgcccgcagtctggcaaggctggcggc
gccaatggcgccccgcaaggcaaccgcaaagcgcaggcaactgctgatgcaggcaagcca
ttatctgaagcagcgcgtcatcaggccctgccgcagacaccgatatttgcccccaagccc
ggcccacgccacatgcccaagggtccacgtaacggcagtggcggcggaggtggccgcggc
agatga |
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