Macrococcus epidermidis: KFV12_04475
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Entry
KFV12_04475 CDS
T08412
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
mepi
Macrococcus epidermidis
Brite
KEGG Orthology (KO) [BR:
mepi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mepi03400
]
KFV12_04475 (addB)
Enzymes [BR:
mepi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFV12_04475 (addB)
DNA repair and recombination proteins [BR:
mepi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KFV12_04475 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
UTH17031
LinkDB
All DBs
Position
823657..827016
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AA seq
1119 aa
AA seq
DB search
MSVKFLMGRRGTGKTHYIIESIKDKLKEQALGDPIIMIAPRQSTFSIEQALSHDELIKGS
MRTAIYSFDRLYWRLKSELGGTDLSLISKAGIEMLTYDVLLQQQTQLRRFQTSSQYYGFS
QKLSQTISELKKYNVTVEQLKALSTANLEVRTQDKLHDIALVYDHLNNEMINEFMQSEDT
LYHLIQLIESSASIKQSDIYIDGFYNFTTIEYLVIIALCRHAKSVTIALTIDPEKRSDLF
RKTEETYHDITEYLKTAHIDFEIKKFITKYRFKNAALNHLEENFDAIHVDAYPESSIEIL
ESDNIQSEVNAIMHKIYNLGKSEYRYKDIAVLYRDQSYADALIKRANQLKIPYHTDKKEV
MHHHHSIELIRSLLDFFKNTYQIDHLFRALKTGLLTKNVERLDIQFVDMLENVMITRGMQ
YKDLIQRRKLQFNKDDMYSTEVWEQFLQYIDTTLEIIELLRISLMNATNANEFATHLYQF
LLNIQLPEYLMASRDKMHEVGQNYKALEFDQLLTGINQVLDDFVEVLRDKDLPYQVMAEI
LDVGLVALEYSAAPQGLDQIQILNLDLAKVENKKVIFICGLNDEILPRRIKEDAIITDYE
KRNISDIGGLKLAPTTDLLTQDERFVAYIAMTNAAELLFLSYSLMNQSYEAMRPSPFIND
IKGITLTHTVNTSQFKPNERITTINTGINVAAHHYQDAEWQAIINYYNNNGYSDIFDLGK
YRNQTKPLNEINIDTLYGDVIKASVSRFESYNQCAFKHFADHGLRLRPRDNYELQSFQLG
NIYHEVLAYLGETYKDQLFKVSKEDIRQAVRQYLAQHLPNVQFEIMYSKQHYRFMMLKIE
AMLTDTFSMIQSHQKQSKFKMAKFETRFGKGGALESQKINLPVGKKVEISGQIDRIDILN
HMNQDYVSVIDYKSGSTALDLRKVYYGIQMQMMTYMDVVLQNKSALGLKETTLPAGMLYF
HVYEPKLKLNHKNEMSEDLLKKRAAAYKMDGYIIDDLDLVSYFDDAISESNKSDIVPASL
KKSGEFTAASKVLPVDVLYRFIEHNRNNFKQTAQNVLSGDCSIMPLSYDNKLPCDFCDFK
PVCHIDPILNAQDIRVKDEKIDAIQEVMKGEQTDGDDVD
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaaatttttgatgggtagacgtggtaccggtaaaacgcattatattattgaa
tccattaaagataaattgaaagaacaagcattaggtgatccaattattatgattgcaccg
agacaaagtacattttcaattgaacaagcgttaagtcatgatgaattaatcaaaggaagt
atgcgtactgcaatatattcttttgatcgattatattggcgtctgaaaagtgaacttggt
ggcacggatttatcattgatttcaaaagcgggcattgagatgttgacgtatgacgtatta
ttgcagcaacaaacgcaattacgtcgtttccagacatcgagccagtactatggatttagt
caaaaactcagtcagacgatcagtgaattaaaaaaatataatgtaacagttgagcaatta
aaagctttatcgactgctaacttagaagtaagaacgcaggataaactgcatgatattgca
cttgtttatgatcatttaaataatgaaatgatcaatgaatttatgcaatctgaagacaca
ctctatcatttaattcagctgatagaatcatctgcatcaataaagcaatctgatatatat
atagatggattttataattttacgacaatcgaatatttagttattatagcgctgtgcaga
catgcaaaatctgtgacgattgcattaacgattgatccggaaaagcgaagtgatttattt
cgtaaaacagaagaaacttatcatgatattacagaatacttaaagactgctcatattgat
tttgaaatcaaaaaatttattacgaaatatcgttttaaaaatgcagctttaaaccattta
gaagaaaatttcgatgcaattcatgtagatgcttatcctgaatcttcaattgaaatatta
gaatcagataacatccagtctgaagtgaatgcaattatgcataaaatatataatctagga
aaatctgaatacaggtataaagatatcgccgtattatatcgcgatcaatcttatgcggat
gctttaattaaaagagcaaatcaactgaagattccttatcatacggataaaaaagaagtg
atgcatcatcaccatagtatagaattaattcgttcattacttgatttctttaaaaatact
tatcaaatcgatcatctgtttagagcactaaaaacaggtttactcacgaaaaatgttgaa
cgtttagacatacagtttgttgatatgcttgaaaatgtaatgataacacgaggtatgcaa
tataaagacttgattcaaagaagaaagcttcaatttaataaagatgatatgtattccacg
gaagtgtgggagcagtttttacaatacatagatacgacactggaaattattgagctttta
agaattagtttgatgaatgctacgaatgcgaatgaatttgctacacacttatatcaattc
cttttaaatattcagttacctgaatatttgatggcaagccgtgataagatgcatgaagtg
ggacaaaattataaggcgcttgagtttgatcaattgttaacaggtattaaccaagtgtta
gacgattttgttgaagtactacgtgataaagatttaccttatcaagtaatggcagaaatc
ttagatgttggacttgttgctttagaatatagtgctgcgccacaaggcttggatcaaata
caaattttgaacttagatttagctaaagttgaaaataaaaaagttatctttatttgtgga
ctgaatgatgaaatattaccacgtcgcatcaaagaagatgcaattattactgattatgaa
aaaagaaatatatcagatatcggtggcttaaaattagcaccaaccactgatttattgacg
caagatgaacgttttgttgcgtatatagcgatgaccaatgcagctgaattgcttttcctg
tcatatagtttgatgaatcagtcttatgaggcgatgcgtccttctccttttattaacgat
attaaaggcatcactcttacccatacagttaacacgtcacaatttaaaccaaacgaacga
ataacgacgataaatactggtattaatgttgcagcgcatcattatcaggatgctgagtgg
caggctattattaactactacaataacaatggctacagcgatatatttgatctaggtaaa
taccgtaaccagacaaaaccgttgaatgaaataaatattgatacactatatggtgatgtt
ataaaagcaagtgtatcgcgctttgaaagctataatcaatgtgcttttaaacattttgct
gatcatggattaagactgagacctcgtgataattatgaactgcaaagtttccagctcgga
aatatttatcatgaagtattagcatatttaggagaaacgtataaagaccaattatttaaa
gtttctaaagaggatatcagacaagcagtacgtcaatatttagcacaacatttaccgaac
gtacagtttgaaataatgtattctaaacaacattatcgttttatgatgcttaagattgaa
gcgatgctgactgatacatttagcatgattcagtcacatcagaaacaaagtaaatttaag
atggctaaatttgaaactcgattcggtaaaggcggagcacttgaaagtcaaaagattaat
ttacctgttggaaaaaaggtcgaaattagtggtcagatagacagaatagatatattaaat
catatgaatcaggattatgtctctgttatagattataaatccgggtcaacagcccttgac
ttacgtaaagtttattatggcattcagatgcagatgatgacctatatggatgtcgtatta
caaaataaatcagcccttggactcaaagagacaacacttcctgcaggtatgctgtatttt
catgtttatgaaccaaaacttaagttgaatcataaaaatgaaatgtccgaagatctgtta
aagaaaagagctgcggcatataagatggacggttatattattgatgatttagatctggtg
agttattttgatgatgcgataagtgaatcgaataaatcagatatagtacctgctagttta
aaaaaatcaggagaatttactgctgcatctaaagtattacctgtcgatgtgctttatcgc
tttattgaacataatcgtaataactttaaacaaacggcgcaaaatgtgttatctggagac
tgtagtattatgcctttatcttatgataataagttaccgtgtgatttttgtgatttcaaa
ccggtttgtcatatcgatccaattttaaatgcacaggatatccgtgtaaaagatgaaaag
atagatgctattcaagaagtaatgaaaggagaacaaactgatggcgatgacgtggactga
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