Macrococcus epidermidis: KFV12_10855
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Entry
KFV12_10855 CDS
T08412
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mepi
Macrococcus epidermidis
Brite
KEGG Orthology (KO) [BR:
mepi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mepi03009
]
KFV12_10855 (rlmD)
Enzymes [BR:
mepi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KFV12_10855 (rlmD)
Ribosome biogenesis [BR:
mepi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KFV12_10855 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Methyltransf_25
MTS
Cons_hypoth95
TRAM
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
N6_Mtase
RrnaAD
UPF0020
Ubie_methyltran
N6_N4_Mtase
Methyltransf_23
TRM
Methyltransf_32
Methyltransf_4
TPR_30
Methyltrans_SAM
BpsA_C
Methyltr_RsmB-F
TehB
CMAS
Zona_CL2
Motif
Other DBs
NCBI-ProteinID:
UTH15770
LinkDB
All DBs
Position
complement(2020380..2021744)
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AA seq
454 aa
AA seq
DB search
MKQINFNKNDELQGTVVDLTHEGSGVVKIDDYPFFVEGALPGEDVTIKVMKVGKTFGFAR
LVSVQNESPDRVAEKDIVGRQIGTMTLQHLSYPAQLKFKQHLVESAFERLGKFKGVKVAE
TVGMEVPYEYRNKAQIPVRTVNGLLETGFFRKNSHQLVPVENFYIQHKAIDAAIVKVRDI
LRKYDIVPYNERNHNGEIRHIVVKRGHYTGQLMIILVTNKKRLQNIESITHDIVNEIENV
ESVVLNFNNQEGNVILGRNNTVLHGTPYYTDKMLGLEFRVSPNSFFQVNTPQAEALYQLA
LEAADLNGTETVLDAYCGIGTISLALAQQAKQVYAMEIVHESIKMAKQNAKMNGIDNVHF
ETGAADEILPKWSEEGVKFDVAVVDPPRKGLDDDFIQTLIAQNPKKIVYVSCNPSTCARD
CRKFADAGYKLETVKPVDLFPQTPHVECVVRLTK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaattaactttaacaaaaatgacgaattacaagggacagtagtagacttaacg
catgaaggatctggtgttgttaagattgacgattatccatttttcgttgaaggcgcatta
ccaggagaagacgtgacaattaaagtgatgaaagtcggtaagacatttggatttgcacgt
cttgtgtcagttcaaaatgaaagcccagaccgtgtcgcagagaaagatatcgttggccgt
caaatcggaacgatgacattacaacatttatcatatccagcacaattaaagttcaaacaa
catttagtagaaagtgcatttgaaagattgggcaagtttaaaggtgtaaaagtagctgaa
actgttggaatggaagtgccttacgaataccgtaataaagcgcaaattccagtaagaact
gttaatggcttgcttgagacaggattctttagaaagaacagtcatcaacttgtgcctgtt
gagaatttctatattcagcataaagcaatcgatgcagcgattgtgaaagtaagagatatc
ttacgtaaatatgatattgtaccttataacgagcgtaaccataacggtgaaatccgtcat
atcgtagtgaaacgtggccattatacaggacaattaatgatcatattagtgacgaataaa
aaacgcctgcaaaacatcgaatcaattacacatgatattgtgaacgaaatcgaaaatgtt
gaaagtgttgtattaaactttaataaccaggaaggtaatgtgattttaggacgtaataat
acagtactacacggtacgccgtattacactgataagatgttaggactagaattcagagta
tcaccaaactcattcttccaggtcaatacaccacaagctgaagcgttgtatcaattagct
ttagaagcagcagatttaaatggtactgaaacagtactggatgcatattgtggcattgga
acgatttctttagcattagcacagcaggcgaaacaagtctatgcgatggaaattgtgcat
gaatcaattaagatggcgaaacagaacgctaagatgaatggcattgataatgtacatttt
gagacaggtgcagcagatgaaatcctgccgaagtggagcgaggaaggcgttaagtttgat
gtagcagtagtcgacccaccacgaaaaggattagacgatgactttattcagacattaatt
gcacaaaaccctaaaaagatcgtctatgtcagctgtaacccgtcaacatgtgcgcgtgac
tgccgtaaatttgcagatgcaggatacaagttagaaacagtaaaaccagtcgacttattc
ccgcaaacgccgcatgtggagtgtgttgttagacttacgaagtaa
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