Macrococcus epidermidis: KFV12_11600
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Entry
KFV12_11600 CDS
T08412
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mepi
Macrococcus epidermidis
Pathway
mepi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mepi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFV12_11600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mepi03019
]
KFV12_11600
03009 Ribosome biogenesis [BR:
mepi03009
]
KFV12_11600
Enzymes [BR:
mepi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFV12_11600
Messenger RNA biogenesis [BR:
mepi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFV12_11600
Ribosome biogenesis [BR:
mepi03009
]
Prokaryotic type
rRNA helicases
KFV12_11600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UTH15906
LinkDB
All DBs
Position
complement(2157679..2159196)
Genome browser
AA seq
505 aa
AA seq
DB search
MQKFRDLGISEPTINALEKMGFTEPTPIQTDSIPHTMAGRDVLGQAQTGTGKTGAFGIPL
IEKVRGQEGIKSLILAPTRELAVQVAEQLKAFSRGQGIQVATVFGGMPIDRQIRELKKKP
QIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKEQRQTML
FSATMPRAIQELVQKFMKDPIIVKTMTNVDSNPDIDEHYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIEKSKN
RTMTALRPPTPGEVMKARELDVKTKVKGWVEKDTEARIESIAQELINEHGDVKLVASLLQ
ELIKSNNDVDVQLTFEKPLGRKGGSGKSYGRGRGGNSGRPGGSRSRSKDGGKDNRRKSFD
RSGKAGASKGGKKPFKARTFADHKK
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttagagacctaggtatcagcgaacctaccataaatgcgctggagaaaatg
ggatttacagaacctacaccgattcaaacggatagtatccctcatacgatggcaggccgt
gacgtattaggccaagcgcaaactggtactggtaaaactggtgcttttggaattccttta
attgaaaaagttagaggccaagaggggatcaaaagtttaattcttgctcctacacgtgaa
ttagctgtccaggttgctgaacaattaaaagcatttagtcgtggacaaggaattcaagta
gcgacagtattcggtggaatgccgattgaccgtcaaattagagaattaaaaaagaaaccc
caaatcgtagttgggacacctggtcgtgtaatcgatcatttaaaccgtcgtacgttaaaa
actgaagacatcaatacgttaatcttagatgaagcggatgaaatgatgaatatgggattc
atcgatgatatgcgttttatcatggataaattaccgaaagaacaacgtcaaacaatgtta
ttctctgcaacaatgccgagagccattcaagagttagttcaaaagttcatgaaagatcct
atcattgttaagacaatgacaaacgttgattcaaaccctgatatcgacgagcattacaca
atcgttaaagaattagagaagtttgatacattcacgaatttcttagatgttcatcaacct
gaacttgcaatcgtattcggacgtacgaaacgtcgtgtagatgagttaacaagtgcgtta
atctctaaaggataccgtgcagaaggtttacatggtgacatcactcaagcgaaacgttta
gaagtacttaagaaatttaaaaatgaccaaattgacatccttgttgcaacagacgttgct
gcacgtggattagatatttctggcgtatcacacgtttataactttgatattcctcaagat
gttgaaagttatacacaccgtatcggtcgtactggccgtgccggtaaacatggtatggcg
atttcattcgttaacccagttgaaatggattacatccgtcaaattgaaaagtctaaaaac
cgtacaatgacggctttacgtccaccaacacctggtgaagtaatgaaagcccgtgaatta
gatgttaagacgaaagttaaaggatgggttgaaaaagatactgaagcacgtatcgagtca
atcgctcaggaattaattaacgaacatggtgatgtgaaattagtagcatcattattacaa
gaattaattaaatctaataacgatgtggatgtacaattaacattcgaaaaaccacttggc
cgtaaaggcggaagcggtaaatcttatggccgtggccgcggtggaaacagcggacgtcca
ggcggatctcgcagtcgttctaaagatggtggtaaagataaccgtcgtaaatcatttgat
cgttctggtaaagcaggtgcttcaaaaggcggaaaaaaaccttttaaagcaagaacattt
gcagaccataaaaaataa
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