Macrococcus epidermidis: KFV12_12590
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Entry
KFV12_12590 CDS
T08412
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mepi
Macrococcus epidermidis
Pathway
mepi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mepi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KFV12_12590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mepi03021
]
KFV12_12590 (rpoC)
03400 DNA repair and recombination proteins [BR:
mepi03400
]
KFV12_12590 (rpoC)
Enzymes [BR:
mepi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KFV12_12590 (rpoC)
Transcription machinery [BR:
mepi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KFV12_12590 (rpoC)
DNA repair and recombination proteins [BR:
mepi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KFV12_12590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UTH16089
LinkDB
All DBs
Position
complement(2351884..2355504)
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPERDGLFCEKIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEEVIYFASYAVIDPGPTGLEKKSLLSEREYREYYDKFPGQFTAKMGAEAIKDLLM
DIDLDGELKSLREELETATGQRLTRAIKRLEVVESFRNSGNDPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEREIATNIKNAKGKIERMEPEIWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERLGTIGEGRIFKDANEVIMAYVNGYVHLHARIAVQ
AGSFNNPTFTDKQNNQLLITSVGKVIFNEIMPESFPFINEPTLSNLETVTPNKYFIDATE
LTEEGLLKYLNEQPLVKPFNKKFLGQIIAEVFNRFHITDTSMMLDRMKDLGFKYSSRAGI
TVGVSDIVVLPDKQDIIGLAEEKVDRVTKQFTRGLITESERYAAVIEIWTKAKDDIQAKL
MNSLDDLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREPDCGTDRGLLVSAIREGSELI
EPFIERLEGRYSRETVRHPETKEILVKVNELITPEIAKQIVDAGIEEMHIRSAFTCNSRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGADITQGLPRI
QELFEARNPKGQAVISEINGEIIELNVVKDRMQEIKVKGENEVRTYLAPGTARLKVEVGQ
KIARGEVMTEGSIEPKQLLAVAGLNATQSYLLKEVQKVYRMQGVEISDKHVEVMVRQMLR
KVRIIEAGDTKLLPGALVDIHTFTDANREVFKARKHPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSGVEYEKDAPALEQDE
VVVTEN
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataactttcattacatgaagataggtctcgcttcacctgaaaaaatc
cgttcttggagttttggtgaagttaaaaagccagaaacaattaactaccgtacattaaaa
cctgaaagagatggtttattctgtgagaaaattttcggtccaacaaaagactgggaatgt
agctgtggtaaatataaacgtgtacgttacaaaggtatggtctgtgaccgttgtggcgtt
gaagtaacaaaatcaaaagtacgtcgtgaacgtatgggacatattgaattagctgcacct
gtatcacacatctggtatttcaaaggaattccttctcgtatgggattacttttagatatg
tctccgcgttctttagaagaagttatctattttgcttcttacgctgtaattgatccaggt
ccaactggattagagaaaaaatcattattatctgaaagagaataccgtgagtattacgat
aagttccctgggcaattcactgctaagatgggtgctgaagcgattaaagatttattaatg
gacatcgacttagatggagaattaaaatctttacgtgaagaattagaaacagcaacagga
caacgtttaacaagagcaatcaaacgtttagaagttgttgaatcattccgtaattctggt
aatgatccttcttggatgattttagatgtattaccaatcattccacctgaaattcgtcca
atggttcaattagatggtggacgtttcgctacatctgatttaaacgatttatatcgtcgt
gttattaaccgtaacaaccgtttaaagcgtttattagatttaggtgcgcctggtatcatc
gtacaaaatgaaaaacgtatgttacaagaagcagttgatgctttaattgataatggtcgt
cgtggccgtccagtaactggaccaggtaaccgtccattaaaatctttatctcatatgtta
aaagggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactactctggg
cgttcggttatcgtagtaggtccaaacttaaaaatgtatcaatgtggtcttcctaaagaa
atggcacttgaattattcaaaccatttgttatgaaagaacttgttgaacgtgaaattgcg
acaaacattaagaacgctaaaggtaaaattgagcgtatggaaccagaaatctgggacgtt
ttagaagacgttattcgtgaacacccagttctgttaaaccgtgcaccaacacttcaccgt
ttaggtatccaggctttcgaaccgacattagttgaaggtcgtgcgattcgattacatcca
cttgtaacgactgcatacaatgccgatttcgatggtgaccaaatggccgttcacgtacct
ttatctaaagaagcgcaagctgaagcacgtatgttaatgttagctgcacaaaatatctta
aaccctaaagatggaaaaccagttgttacaccatctcaggatatggtattaggtaactac
tacttaacattagagcgtttaggtacaattggtgaaggtagaatctttaaagatgcaaat
gaagttattatggcttatgtcaatggatatgttcatctacatgcgcgtattgccgttcaa
gctggatcatttaacaatccaacatttactgacaaacaaaacaaccaattattaatcact
tctgttggtaaagtaatctttaatgaaattatgcctgaatcattcccgttcattaacgaa
ccaactttatcaaacttagaaacagtaacacctaataaatatttcatcgatgcaactgaa
ttaactgaagaaggattattaaaatacttaaatgagcaaccacttgttaaaccatttaat
aaaaaattcttaggtcaaatcattgctgaagtgttcaatagattccatattactgatact
tctatgatgttagacagaatgaaagatttaggatttaaatattcttcacgtgccggtatt
acagtaggtgtatctgacatcgtggtattacctgataaacaagatattatcggtttagca
gaagaaaaagtagatagagtaacgaaacagttcacacgtggtttaattactgaaagtgaa
cgttacgctgctgttattgaaatttggacgaaagctaaagatgacattcaagcaaaatta
atgaactctttagatgacttgaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcatctaactttacgcagttagcaggtatgcgtggactgatggccaacccggctgga
cgtatcattgagttaccaatcaaatcttcattccgtgaaggtttaacagtattagaatac
tttatctctacgcatggtgcgcgtaaaggtcttgccgatacagcacttaaaacagccgat
tcaggttacttaacacgtcgtctagttgacgttgctcaagacgttatcgtacgtgaacct
gattgtggtactgaccgtggattacttgtttcagcgatccgtgaaggttcagaacttatt
gaaccattcattgagcgtttagaaggacgttattctcgtgaaacagtaagacacccagaa
acaaaagaaattcttgttaaagtgaacgaattgattacacctgaaatcgcgaaacaaatc
gtggatgcaggtatcgaagaaatgcatatccgttcagcatttacatgtaactcacgtcac
ggggtttgtgaaaaatgttacggtaaaaacttagcaacaggtgaaaaagtagaagttggg
gaagcagttggtacaatcgctgcccaatctatcggtgaacctggtactcagttaacgatg
cgtacattccatacaggtggggttgccggtgccgatattacacaaggtttacctcgtatc
caggagttattcgaagcgcgtaatccgaaaggtcaagctgtaatctctgagattaacggt
gagattatcgaattaaacgttgtaaaagatcgtatgcaggaaattaaagttaaaggtgag
aatgaagtacgtacttacttagcacctggtactgcaagacttaaagtagaagttgggcaa
aaaatcgcgcgtggtgaagtaatgactgaaggttctatcgagcctaaacaattattagct
gtagcgggacttaatgcgacacaaagctacttattaaaagaggttcaaaaagtataccgt
atgcaaggggtagaaatctcagataaacacgttgaggtaatggtacgtcaaatgttacgt
aaagttcgtattatcgaagcaggagacacaaaattattaccaggtgcattagttgatatt
catacatttactgatgctaaccgtgaagtgtttaaagcgagaaaacacccagcaacagcg
aaacctgtattgcttggtattacgaaagcatcacttgaaacagaaagtttcttatctgca
gcatcgttccaggaaacaacacgtgtgttaactgatgcagcgattaaaggtaaacgtgat
gacttattaggacttaaagaaaacgttattatcggtaagttaataccagctggtacaggt
atgagacgttatagtggcgttgaatacgaaaaagatgcaccagcattagagcaagatgaa
gtagtagtaactgaaaattaa
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