Macrococcus epidermidis: KFV12_12880
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Entry
KFV12_12880 CDS
T08412
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mepi
Macrococcus epidermidis
Pathway
mepi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mepi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFV12_12880 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mepi03400
]
KFV12_12880 (mfd)
Enzymes [BR:
mepi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFV12_12880 (mfd)
DNA repair and recombination proteins [BR:
mepi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KFV12_12880 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Glyco_hydro_115
IstB_IS21
MFD_D3
DUF3638
KGK
Motif
Other DBs
NCBI-ProteinID:
UTH16131
LinkDB
All DBs
Position
complement(2403527..2407024)
Genome browser
AA seq
1165 aa
AA seq
DB search
MRQIIDKLLKSDERFNEYNDSLGKQNILVTGLNPSAKAVILAESYLSHKKQMIVVTSNLF
QAEKLENDLAQLIDEEELFKFPVQDIMIEEFSTKSPDLMRERIRTLTHLAKGQAGLFLVP
INGLQKLVSRPELFTDYHREIKIGEDIDLIQLQQDLVDMGYQKSERVTTLGQFSVRGGLI
DIFPMIGEPVRIELFDTEVDAIRYFDADSQRSLNNIDSVEISTASEFIFTSKDIELLESN
LSDAFEATRQKIATNVRDDLRDTYQTIKMNMGEILNHNILRRVVKFAYNKETTIIDYFDK
EAIVIVDEINRVNEAIESSIRETSEFHQSLIESGRGFVGQTFIKEDSFETLMNQFNVAYF
TLFTASMPVKLQNIYKFSCKPLQQFYGQYDLMFSEFDRFRKNDFNIVVLASNATRKDKIK
SMLADMKLPVTLDTKGSKPGINTIVEGDLSEGFELPFMKLVVVTERELFKLRKEKPKRTK
KLSNAEKIKSYQELNVGDYIVHVHHGVGRYMGVETLLVNKMHKDYIKIQYKGTDQLFVPV
DQMNYVQKFVGSEDKEPKLNKLGGTEWKKTKARVQQSVEDIAEELLKLYQERERVEGYQF
GPDTEAQETFEMDFPYEPTADQVQSLVEIKQDMEKRKPMDRLLCGDVGYGKTEVAVRAAF
KAVLDGKQVAFLVPTTILAQQHYETLIERMQDYPVEIQMMSRFRSKKEIDETKKGLKSGF
VDIVVGTHKLLSKDIVYKDLGLLIVDEEQRFGVTHKEKIKALKTNVDVLTLTATPIPRTL
HMSLLGVRDLSVIETPPENRFPVQTYVLEYQHNFIKEAMERELARNGQVFYLYNRVASIY
QKAEQLEMMMPDARIAVAHGQLSERELEETMLGFINGEYDILVTTTIIETGVDVPNANTL
IIEDADRFGLSQLYQLRGRVGRSNRISYAYFLHAPNKVLTEVAEQRLQAIKEFTELGSGF
KIAMRDLNIRGAGNLLGRQQHGFIDSVGYDLYSEMLQQAVNEKRGIKQVEEVPQLEIEVE
VDAYIPADYIREEQAKIEFYKKLRSVTTESELMDIQDEMTDRYGEYPEAVDQLMKIVEIR
INALAFGIVNVKDTGKAVVLESSIATTNKINGERLFKATEDFGRDLKIEYKDNKMTFTLK
KNANWLAALVQLTRQIQEGIEFDGE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagacagataatagataaattgttgaaaagtgatgaacgatttaacgagtataatgat
tcactcggtaaacaaaatatattggtgacgggtttaaatccaagtgcaaaagccgtaatt
ttagcggaaagttatttaagccataaaaaacaaatgattgtcgtgacaagtaacttgttt
caggcagaaaaattagaaaacgatttagcacaactgattgatgaagaggaactatttaag
tttccggtacaagatattatgattgaagagttctcgacaaaaagtccggatttaatgcgt
gagcgtattcgtacacttacccacttggcaaaaggtcaagctgggttatttctcgtgccg
attaacgggcttcaaaagcttgtaagtcgaccggagttatttacagattatcatcgtgaa
ataaaaattggagaagatattgatctcattcaattacaacaagatttagtagatatggga
taccagaaaagtgagcgcgtaacgacgcttggtcagttttcagtacgtggtggattaatt
gatattttcccgatgattggtgagccggtccgcattgaattattcgatactgaagttgat
gctattcgttattttgatgcggatagtcaacgttcattaaataatatcgattcagttgaa
atttctacagcaagtgaatttatttttacgagtaaagatatagaattactggaatctaat
ttatctgatgcatttgaggcaacacgccaaaagattgcgacaaatgtgagagatgattta
cgtgatacgtatcaaactatcaaaatgaatatgggagaaatacttaatcataatatttta
cgtcgcgttgtaaaatttgcttataataaagagacgacgattattgattactttgataaa
gaagcaattgtaattgtcgatgaaattaatcgtgtaaatgaagcgatagaatcaagtatt
cgagaaacaagtgaatttcaccaatctttaattgaatcgggtcgtggatttgtcggacag
acattcattaaagaagatagctttgaaacactgatgaatcaatttaatgtagcatacttt
acactgtttactgcttctatgccagtgaagttacaaaatatctataaattctcttgtaaa
ccattgcagcaattttacggacaatatgatttaatgttttcagagtttgaccgtttcaga
aaaaatgacttcaatatcgttgtactggcaagtaatgcaacgagaaaagataagattaaa
tcaatgctagctgatatgaaattacctgtaacgcttgatactaagggaagtaaaccgggt
attaatacaattgtcgaaggtgatttgtcagaaggtttcgagttaccgtttatgaaactt
gttgttgtcactgaacgcgagctatttaaattacgtaaagaaaaaccgaaacgtacgaag
aagttatcgaatgccgagaaaattaaatcttatcaggaattaaatgttggtgactacatt
gtccatgtgcatcatggcgtaggacgttatatgggtgttgagacattactcgtcaataag
atgcataaagactatattaaaattcaatataaagggactgatcaactgtttgtgccagtc
gatcaaatgaattatgttcaaaagtttgtcggttcagaagataaagagccgaagctaaac
aaactcggcggcacagaatggaaaaagacaaaagcgcgcgttcaacaaagcgttgaagat
atcgctgaagaattattgaagttatatcaggagcgagagcgcgttgaaggatatcagttc
ggacctgatactgaggcacaggaaacgtttgaaatggactttccgtatgaaccaactgca
gaccaggtacaaagtctcgttgaaattaaacaagatatggaaaagcgtaaaccgatggat
cgtctgctttgtggagatgttggttacggtaaaactgaagtcgctgttcgtgcagcgttc
aaagcggtacttgatggtaaacaagttgcatttttagtgccaacgacaatactcgcacaa
caacattatgagacgttaattgagcgtatgcaggattatccagttgaaatacagatgatg
agccgtttcagatcaaagaaagaaatagatgaaacgaaaaaaggattaaagtctggattt
gttgatattgtagttggcacacataaactactgagcaaagatattgtgtataaagattta
ggcttgcttatcgtcgatgaggagcaacgatttggtgttacacataaagagaaaattaaa
gcgttgaagacaaatgtcgatgtattaacgcttacagcaacaccaattccaagaacactg
catatgagtttactgggtgtacgtgacttatcggtcattgaaacaccaccggaaaataga
tttccggtacagacgtatgtactagaatatcaacataactttattaaagaagcaatggaa
cgtgaattagcacgtaacggacaagtattttatctatacaatcgtgtagcgagcatttat
cagaaagctgaacagctagagatgatgatgccggacgcgcgcattgctgttgcgcatggt
caattatcagaacgtgaactagaagaaacgatgcttgggtttattaatggtgaatacgac
attttagtgacaacaacaattatcgaaacgggtgtcgatgtaccgaatgccaatacttta
ataattgaagatgcagaccgatttggcttaagtcaattgtatcagttacgtggtcgcgtc
ggtcgtagtaatcgtattagttatgcctacttcttgcatgcaccaaataaagtactcact
gaagtagctgaacagcgtttgcaggcaataaaagaatttactgagcttggctctggattt
aaaattgcaatgcgtgatttaaatattcgtggcgcagggaatttattaggacgtcagcaa
catggatttattgattctgttgggtatgatttgtattctgaaatgctgcagcaagcagtt
aatgaaaaacgtggtattaaacaagtcgaagaagtgcctcaactagaaatagaagtagaa
gttgatgcatatattccagctgactatattcgtgaagaacaagcgaagattgaattttat
aaaaagctacgcagcgtgacgacagaatcagaattaatggatattcaggatgaaatgacc
gatcgatatggtgaatatccagaagcggttgatcagttaatgaagatcgttgaaatcaga
ataaatgctttagcgtttggtattgtgaatgtgaaagataccggaaaggcagttgtgctt
gagtcaagtatagctacgacgaataaaattaacggtgaacgtttatttaaagcgacagaa
gatttcggtcgagacttaaagatagaatataaagacaataaaatgacatttacgctgaag
aaaaatgcaaactggcttgctgcattagtacaactcacgcgtcaaatacaagaaggaatc
gagtttgatggagaataa
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integrated database retrieval system
